Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6i10
(678 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK027574-1|BAB55208.1| 138|Homo sapiens protein ( Homo sapiens ... 132 1e-30
BC014975-1|AAH14975.1| 138|Homo sapiens hypothetical protein FL... 130 3e-30
AC022201-1|AAX93110.1| 138|Homo sapiens unknown protein. 130 3e-30
AL031963-1|CAI20494.1| 145|Homo sapiens chromosome 6 open readi... 112 1e-24
BC028697-1|AAH28697.3| 913|Homo sapiens WD repeat domain 44 pro... 31 5.0
BC035251-1|AAH35251.1| 1031|Homo sapiens coiled-coil domain cont... 30 8.7
>AK027574-1|BAB55208.1| 138|Homo sapiens protein ( Homo sapiens
cDNA FLJ14668 fis, clone NT2RP2003194. ).
Length = 138
Score = 132 bits (319), Expect = 1e-30
Identities = 63/138 (45%), Positives = 87/138 (63%)
Frame = +1
Query: 88 MVEAQKYRIEQEMTNLVNELDRSYLRKMQGDMHRCASKCCDDTQSPLERVHGCIENCTTP 267
M E Q+ R+++ M ++V L+R +RKMQG M RC++ CC+D+Q+ +++VH CIE C P
Sbjct: 1 MAELQQLRVQEAMESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVP 60
Query: 268 LNHANNYVQNEINHFQNRLQRCVMDCNDTARDRLGPDPSQETIDKCTIDFEKCAVKCVDK 447
L A V +E+ FQ+RL RC M CND A+D + S+E K +D C KCVD
Sbjct: 61 LAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAG-SKELQVKQQLD--SCVTKCVDD 117
Query: 448 HMSLIPGMMKTMKKVLAS 501
HM LIP M K MK+ L S
Sbjct: 118 HMHLIPTMTKKMKEALLS 135
>BC014975-1|AAH14975.1| 138|Homo sapiens hypothetical protein
FLJ14668 protein.
Length = 138
Score = 130 bits (315), Expect = 3e-30
Identities = 62/138 (44%), Positives = 87/138 (63%)
Frame = +1
Query: 88 MVEAQKYRIEQEMTNLVNELDRSYLRKMQGDMHRCASKCCDDTQSPLERVHGCIENCTTP 267
M E Q+ R+++ + ++V L+R +RKMQG M RC++ CC+D+Q+ +++VH CIE C P
Sbjct: 1 MAELQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVP 60
Query: 268 LNHANNYVQNEINHFQNRLQRCVMDCNDTARDRLGPDPSQETIDKCTIDFEKCAVKCVDK 447
L A V +E+ FQ+RL RC M CND A+D + S+E K +D C KCVD
Sbjct: 61 LAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAG-SKELQVKQQLD--SCVTKCVDD 117
Query: 448 HMSLIPGMMKTMKKVLAS 501
HM LIP M K MK+ L S
Sbjct: 118 HMHLIPTMTKKMKEALLS 135
>AC022201-1|AAX93110.1| 138|Homo sapiens unknown protein.
Length = 138
Score = 130 bits (315), Expect = 3e-30
Identities = 62/138 (44%), Positives = 87/138 (63%)
Frame = +1
Query: 88 MVEAQKYRIEQEMTNLVNELDRSYLRKMQGDMHRCASKCCDDTQSPLERVHGCIENCTTP 267
M E Q+ R+++ + ++V L+R +RKMQG M RC++ CC+D+Q+ +++VH CIE C P
Sbjct: 1 MAELQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVP 60
Query: 268 LNHANNYVQNEINHFQNRLQRCVMDCNDTARDRLGPDPSQETIDKCTIDFEKCAVKCVDK 447
L A V +E+ FQ+RL RC M CND A+D + S+E K +D C KCVD
Sbjct: 61 LAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAG-SKELQVKQQLD--SCVTKCVDD 117
Query: 448 HMSLIPGMMKTMKKVLAS 501
HM LIP M K MK+ L S
Sbjct: 118 HMHLIPTMTKKMKEALLS 135
>AL031963-1|CAI20494.1| 145|Homo sapiens chromosome 6 open reading
frame 87 protein.
Length = 145
Score = 112 bits (269), Expect = 1e-24
Identities = 58/145 (40%), Positives = 87/145 (60%), Gaps = 1/145 (0%)
Frame = +1
Query: 76 NKLKMVEAQKYRIEQEMTNLVNELDRSYLRKMQGDMHRCASKCCDDTQSPLERVHGCIEN 255
+++ MVE Q+ R+++ + ++V L+R + K QG M C++ CC+D+Q+ ++VH CIE
Sbjct: 4 HRVTMVELQQLRVQEVVDSMVKSLERENIWKTQGLMFWCSASCCEDSQAFTQQVHQCIEC 63
Query: 256 CTTPLNHANNYVQNEINHFQNRLQRCVMDCNDTARDRLGPDPSQETIDKCTIDFEKCAVK 435
C PL V +E+ FQ+ L RC M CND A+D + S+E K +D C K
Sbjct: 64 CPVPLAQVQALVTSELEKFQDHLARCTMHCNDKAKDSIDAG-SKELQVKQQLD--GCVTK 120
Query: 436 CVDKHMSLIPGMMKTMKK-VLASGK 507
CVD H+ LI M K MK+ VL+ GK
Sbjct: 121 CVDDHIHLISTMTKKMKEAVLSIGK 145
>BC028697-1|AAH28697.3| 913|Homo sapiens WD repeat domain 44
protein.
Length = 913
Score = 30.7 bits (66), Expect = 5.0
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
Frame = +1
Query: 208 DDTQSPLERVHGCIENCTTPLNHANNYVQNEINHFQNRLQRCVMDCNDTA------RDRL 369
++T+ L++ E C P++ Q N L+ N A D L
Sbjct: 131 EETELELKKCFPSDETCEKPVDETTKLTQTSSTEQLNVLETETEVLNKEAVEVKGGGDVL 190
Query: 370 GPDPSQETIDKCTIDFEKCAVKCVDKHMSLIPGMMKTMKKVLASGKPPPT 519
P PS K E+ A +H++ P ++ + KK + + PPPT
Sbjct: 191 EPVPSDSLSTKDFAAVEEVAPAKPPRHLTPEPDIVASTKKPVPARPPPPT 240
>BC035251-1|AAH35251.1| 1031|Homo sapiens coiled-coil domain
containing 40 protein.
Length = 1031
Score = 29.9 bits (64), Expect = 8.7
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 88 MVEAQKYRIEQEMTNLVN-ELDRSYLRKMQGDMHRCASKCCDDTQSPLERVH 240
M+ +K ++ +EM + V+ E+ ++ +R M+G++HR K C T+ VH
Sbjct: 908 MLWEKKIQLAKEMRSSVDSEIGQTEIRAMKGEIHR-MKKYCRTTRDARRHVH 958
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,607,305
Number of Sequences: 237096
Number of extensions: 1953199
Number of successful extensions: 3812
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3804
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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