Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6i04
         (628 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2DB91 Cluster: Putative uncharacterized protein; n=1; ...    34   2.4  
UniRef50_Q7RG01 Cluster: Putative uncharacterized protein PY0455...    33   7.4  
UniRef50_Q60E17 Cluster: Putative polyprotein; n=2; Oryza sativa...    32   9.8  

>UniRef50_A2DB91 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 223

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 199 LGIFIQDRLTKMQTFTYTAHIAVPTDVMYTGLKLENYKL 315
           LGI I ++    Q   +TA+I VP  +M   LK EN+KL
Sbjct: 67  LGILIFNKAIAFQFSVFTANIIVPKTIMIQKLKAENWKL 105


>UniRef50_Q7RG01 Cluster: Putative uncharacterized protein PY04550;
           n=5; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY04550 - Plasmodium yoelii yoelii
          Length = 283

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
 Frame = +2

Query: 338 NHFRIH*N--THKSFMKIGPAVEEEFTRTHKDRRII*LYICSIGKNGTYEKSVKRNVKM* 511
           N + I  N  +H S+ K    ++   T    D     + I + GK   Y+ S +R  K  
Sbjct: 17  NKYNIEDNIYSHVSYQKKNQFLKLNLTNLSND-----IEITNQGKRILYDLSRRRRNKK- 70

Query: 512 MRENRKGKENDREIGR-WRKRLKNEQGVPNKSVN 610
            R  R+GK+  R  GR WRK+ KN+    NK  N
Sbjct: 71  RRNKRRGKKR-RGFGRLWRKKNKNKNARRNKRKN 103


>UniRef50_Q60E17 Cluster: Putative polyprotein; n=2; Oryza
           sativa|Rep: Putative polyprotein - Oryza sativa subsp.
           japonica (Rice)
          Length = 1304

 Score = 32.3 bits (70), Expect = 9.8
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +2

Query: 467 NGTYEKSVKRNVKM*MRENRKGKENDREIGRWRKRLKNEQ 586
           +G + KS KR V+  MR   + +EN ++IGR  KR K +Q
Sbjct: 417 SGIFSKSQKRRVQR-MRNMEQFQENQQDIGRRLKRAKTKQ 455


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,549,771
Number of Sequences: 1657284
Number of extensions: 10629256
Number of successful extensions: 23484
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23458
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)