Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6i04
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    28   1.3  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    27   1.7  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   5.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   6.8  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.0  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    25   9.0  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   9.0  

>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 530 GKENDREIGRWRKRLKNEQGVPNK 601
           GK+  R+I RWR ++++E G+  K
Sbjct: 310 GKKEFRDILRWRLKIRDEMGIGKK 333


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 524 RKGKENDREIGRWRKRLKNEQGVPN 598
           RK K  D++  +W+ R+  + G+PN
Sbjct: 28  RKQKRADKKNPQWKSRIPKDPGIPN 52


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 371 FCVCFNEFENGLFTILIQNSL*FSNLRPVYMTSVGTAICAVYVN 240
           F + ++E++ G   +L  NS+    L P    + G+A  +V+VN
Sbjct: 235 FALKYSEWKPGQLAVLSNNSITLRQLLPCVNGNEGSANNSVFVN 278


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 264 RYMCSICECLHFC*SILDKNA*TN 193
           RY CS+C+    C S L  N+ +N
Sbjct: 147 RYKCSVCDDYDICESCLTDNSHSN 170


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 233 IFVNRSWIKMPKRISMKLCKKNCIL 159
           +FVNR+ + +P+R S+ L K   ++
Sbjct: 215 VFVNRALLTLPERRSLNLSKSEFVV 239


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/57 (21%), Positives = 30/57 (52%)
 Frame = -2

Query: 339 FIHNPDSK*FVIFQFKTCVHDICWNRYMCSICECLHFC*SILDKNA*TNFDETLQKK 169
           F  N  ++  ++   ++ + D  ++ Y+ + C       +I DK++ +  DE+++KK
Sbjct: 231 FFSNSLNRDSIVEFLQSSIKDNNFSEYLATFCSKKSCIITIQDKDSDSGIDESIRKK 287


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 560 IFLFLCHSLFPFCFLSFTS*RSVSHSFHTF 471
           IFL L HS+FP   L F +  +V+   H F
Sbjct: 519 IFLQLIHSIFPNTKLGFKNFLTVAKQKHGF 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,478
Number of Sequences: 5004
Number of extensions: 50417
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)