Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6i04
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0985 - 33331257-33332498                                         29   3.0  
03_06_0112 - 31739783-31740482,31740648-31740777,31740906-31741041     28   7.0  
02_05_1000 + 33417357-33417600,33417692-33417744,33418376-334184...    28   7.0  

>02_05_0985 - 33331257-33332498
          Length = 413

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 240 IHIYCTYSGSNRCHVH 287
           IH+YC Y G +RC +H
Sbjct: 72  IHVYCFYCGIDRCSLH 87


>03_06_0112 - 31739783-31740482,31740648-31740777,31740906-31741041
          Length = 321

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 218 SWIKMPKRISMKLCKKNCIL 159
           +WI +P++I +K C K+C L
Sbjct: 37  NWIALPQKIGLKRCGKSCRL 56


>02_05_1000 +
           33417357-33417600,33417692-33417744,33418376-33418413,
           33418720-33419114,33420092-33420221,33420512-33421343
          Length = 563

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 218 SWIKMPKRISMKLCKKNCIL 159
           +WI +P++I +K C K+C L
Sbjct: 235 NWIALPQKIGLKRCGKSCRL 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,304,094
Number of Sequences: 37544
Number of extensions: 261765
Number of successful extensions: 538
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)