Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6i04
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical pr...    31   0.67 
Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical pr...    31   0.67 
Z92796-2|CAB07231.1|  347|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +2

Query: 404 EFTRTHKDRRII*LYICSIGKNGTYEKSVKRNVKM*MRENRKG-KENDREIGRWRKRLKN 580
           + +R  KDRR+       +GK+GT  + +K+  +    +  KG +E D+ +   +KR   
Sbjct: 192 QVSRQQKDRRVSSTTRGKVGKSGTSRRPMKQREREDTVDESKGEEEEDQGVRPAQKRQVK 251

Query: 581 EQGVPNK 601
           +Q  P K
Sbjct: 252 QQEKPRK 258


>Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +2

Query: 404 EFTRTHKDRRII*LYICSIGKNGTYEKSVKRNVKM*MRENRKG-KENDREIGRWRKRLKN 580
           + +R  KDRR+       +GK+GT  + +K+  +    +  KG +E D+ +   +KR   
Sbjct: 192 QVSRQQKDRRVSSTTRGKVGKSGTSRRPMKQREREDTVDESKGEEEEDQGVRPAQKRQVK 251

Query: 581 EQGVPNK 601
           +Q  P K
Sbjct: 252 QQEKPRK 258


>Z92796-2|CAB07231.1|  347|Caenorhabditis elegans Hypothetical
           protein H25K10.3 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 21/80 (26%), Positives = 35/80 (43%)
 Frame = +1

Query: 31  RVLAITLTYSFLTYPVLTNPGLTVIMYN*RSDYVVYINQYNLYNIQFFLQSFIEIRLGIF 210
           +V A+ L  S+    ++ +     ++YN  SD    IN Y L+     L+ +I I+LG+ 
Sbjct: 259 QVAALCLFASYAASILVISLDKFYLLYNAMSDLYAGINPYLLWIFSDSLRKYILIQLGLA 318

Query: 211 IQDRLTKMQTFTYTAHIAVP 270
                      T T+   VP
Sbjct: 319 KGRMNPTSSVITVTSRSHVP 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,643,780
Number of Sequences: 27780
Number of extensions: 283316
Number of successful extensions: 665
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)