Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6i04
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.8  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 120 PSIVHNYSQTWVSEYWISEK 61
           P  + NY   +VSEYW+  +
Sbjct: 333 PDGIRNYLTKFVSEYWMETR 352


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +2

Query: 461 GKNGTY--EKSVKRNVKM*MRENRKGKENDREIGRWRKRLKNEQGVPNKSVN 610
           G  G Y  EK  K   K    E  +GKE+  ++ +WRK    + G   K VN
Sbjct: 197 GAIGAYGPEKGPKVPEKKKEDEIDEGKESKTKLSQWRK----DGGTVKKKVN 244


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 32  GSWLLLSLIVFSLI 73
           G W+L++LIV +++
Sbjct: 62  GPWILVTLIVLAIV 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,080
Number of Sequences: 438
Number of extensions: 3550
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)