Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6h22
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    96   3e-21
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    31   0.085
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          27   1.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   5.6  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    25   7.3  

>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 95.9 bits (228), Expect = 3e-21
 Identities = 43/86 (50%), Positives = 62/86 (72%)
 Frame = +1

Query: 214 FHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELNAGFRLLNLKNDHLR 393
           FHL IE YL  +L++CSEL+R +VNSV  G+Y  P      + ++++ F++L+LKND LR
Sbjct: 151 FHLSIEQYLHAVLSLCSELARQSVNSVISGNYHIPFEALNTIQKVHSSFQVLSLKNDSLR 210

Query: 394 KRFDALKYDVKKIEEVVYDLSIRGLL 471
           + FD LKYD+K+ E+VVYDL I  L+
Sbjct: 211 RHFDGLKYDLKRSEDVVYDLRIHKLV 236


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 31.5 bits (68), Expect = 0.085
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 247  LLTMCSELSRLAVNSVTRGDYERPLRISKFV-MELNAGFRLLNLKNDHLRKRFDALKYDV 423
            L T+ S   R  +N V R   E  L +   + M LN  F L   +ND       AL Y  
Sbjct: 1766 LETISSVHHRSPINQVVRNLNESQLSLDSVISMNLNKEFALTKTENDFTDDNGRALNYFS 1825

Query: 424  KKIEEV 441
            +K+EE+
Sbjct: 1826 QKLEEL 1831


>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
 Frame = +1

Query: 232 DYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELNAGF----RLLNLKNDHLRKR 399
           DY++G+  M  E+ R  V + ++   ++  +  KF+  L+        L +     L+++
Sbjct: 126 DYVLGVCDMTGEIMRFLVTNGSKFSVQQLTQQVKFLRGLHKNCSEIEHLPSKVKSELQQK 185

Query: 400 FDALKYDVKKIEEVVYDLSIR 462
              ++  + K+E + Y   +R
Sbjct: 186 LSVMENSISKVEGICYSKILR 206


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 119 NELINKIFSDFQKNLDQEQELRELVQWS 202
           NE + +IF +     +QE+ +RE + W+
Sbjct: 435 NEKLQQIFIELTLKTEQEEYVREQIAWT 462


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 171 NKNYES*SSGVKRRFPF 221
           NKN  + SSGVKR  PF
Sbjct: 94  NKNESNQSSGVKRAMPF 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,890,940
Number of Sequences: 5004
Number of extensions: 32328
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)