Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6h22
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0176 + 15432092-15432470,15432592-15432688,15432801-154329...   110   6e-25
01_01_1144 - 9066832-9066935,9067968-9068169,9068265-9068414,906...    46   2e-05
04_04_1517 + 34125549-34125634,34125725-34125789,34125878-341260...    28   4.3  
11_01_0164 - 1342790-1342870,1343031-1343117,1343201-1343319,134...    28   5.6  
04_03_0241 - 13243938-13244453,13244538-13246334                       28   5.6  
11_01_0144 + 1187532-1187813,1188913-1189454,1189621-1189707,119...    27   7.5  
12_02_1117 + 26206683-26206874,26207628-26207630                       27   9.9  

>10_08_0176 +
           15432092-15432470,15432592-15432688,15432801-15432985,
           15433012-15433056,15433447-15433472,15435299-15435434,
           15435608-15435702
          Length = 320

 Score =  110 bits (265), Expect = 6e-25
 Identities = 47/87 (54%), Positives = 66/87 (75%)
 Frame = +1

Query: 214 FHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELNAGFRLLNLKNDHLR 393
           F LD+EDYL GL  M ++  R  VN VT GDY+ P ++  F+ +L+A FR+LNL+ND LR
Sbjct: 226 FGLDVEDYLTGLCFMSNDFPRYVVNRVTAGDYDCPRKVLSFLTDLHASFRMLNLRNDFLR 285

Query: 394 KRFDALKYDVKKIEEVVYDLSIRGLLP 474
           K+FD +KYD++++EEV YD+ IRGL+P
Sbjct: 286 KKFDGMKYDLRRVEEVYYDVKIRGLVP 312


>01_01_1144 -
           9066832-9066935,9067968-9068169,9068265-9068414,
           9068553-9068637,9069264-9069343,9069972-9070070
          Length = 239

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
 Frame = +1

Query: 208 EGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELNAGFRL---LNLK 378
           E   +++ DY++G+  +  EL RLA+  ++ G+ E    I  FV ++     L   L   
Sbjct: 126 EPLQINVLDYVLGVADLSGELMRLAIGRISDGEVEYAKNICAFVRDIYRELTLVVPLMDD 185

Query: 379 NDHLRKRFDALKYDVKKIEEVVYDLSIRG 465
           N  ++K+ + +   V KIE   + + +RG
Sbjct: 186 NSEMKKKMETMLQSVVKIENACFSVHVRG 214


>04_04_1517 +
           34125549-34125634,34125725-34125789,34125878-34126085,
           34126819-34126911,34127302-34127389,34127788-34128060
          Length = 270

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +1

Query: 325 ISKFVMELNAGFRLLNLKNDHLRKRFDALKYDVKKIEEVVYDLSIRGLLPKG 480
           + K  +EL AG R   + +  LRK+  A K+    ++ V+ D   RGLL  G
Sbjct: 109 VEKAAVELLAG-RAFTVSD--LRKKLRAKKFPDNAVDSVIADFKSRGLLNDG 157


>11_01_0164 -
           1342790-1342870,1343031-1343117,1343201-1343319,
           1343405-1343641,1343984-1344044,1344360-1344752,
           1345866-1346165
          Length = 425

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 525 IYLLFMFVFWSVVRIALGQQPPDAEIVDHF-LYFLHVIL*GVEAFAQMVVLQVQ 367
           + LL +++F + + IALGQ P  + +     L+++ V+   + AF   + LQ Q
Sbjct: 139 VILLPVYIFTTPLLIALGQDPEISAVAGTISLWYIPVMFSYIWAFTLQMYLQAQ 192


>04_03_0241 - 13243938-13244453,13244538-13246334
          Length = 770

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +3

Query: 198 GVKRRFPFGH*RLSDWTIDDVLRIVSSGRELCDPRRLRAPPEDLQVRDGTERRLQAIE 371
           GV    PF    + D+T   V   + +    C P R R PP +L V DG     +A E
Sbjct: 214 GVHHPVPFHLEEIHDYTSAGV---ILTDETTCQPTRRRLPPWNLGVLDGEPVPARAFE 268


>11_01_0144 +
           1187532-1187813,1188913-1189454,1189621-1189707,
           1190151-1190260,1190346-1190464,1190548-1190634,
           1191554-1191853
          Length = 508

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 525 IYLLFMFVFWSVVRIALGQQPPDAEIVDHF-LYFLHVIL*GVEAFAQMVVLQVQ 367
           + LL +++F + + IALGQ P  + +     L+++ V+   + AF   + LQ Q
Sbjct: 133 VILLPVYIFTTPLLIALGQDPEISAVAGTISLWYIPVMFSYIWAFMLQMYLQAQ 186


>12_02_1117 + 26206683-26206874,26207628-26207630
          Length = 64

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 449 ISASGGCCPRAMRTTDQ 499
           ++ASGG CP AM+ T Q
Sbjct: 1   MAASGGSCPAAMKATSQ 17


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,232,688
Number of Sequences: 37544
Number of extensions: 212541
Number of successful extensions: 663
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)