Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6h21
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    31   0.46 
AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...    28   4.3  

>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -2

Query: 270 PTVQNILLLKVINKLYHCNQDVSKMWL*VARIY*PQHAVESSTHSNTCLY 121
           P+V N+L+ + +  +++ ++  S  WL VA +     A  SS   +TC Y
Sbjct: 777 PSVSNVLMFRKMEHIFYSSE--SNWWLLVALVMLTIFAYRSSMEQHTCYY 824


>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -2

Query: 414 FT*PLLVFHCLNFFN----LDXAISNI*YFHFLTFRVFTFQVLITT 289
           FT   L  +C++FFN    +   IS I YF + +  VF F ++  T
Sbjct: 590 FTAIYLFIYCIHFFNTKLTISGTISTILYFSYTSIFVFMFFLMTGT 635


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,303,887
Number of Sequences: 27780
Number of extensions: 197166
Number of successful extensions: 406
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)