Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6h19
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    28   0.58 
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    27   1.0  
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    27   1.8  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    25   4.1  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    24   9.4  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    24   9.4  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 448 LDELNSLFVKYNRKAQDIFEWKTSMLKRYETLARTTAASVQPNVE 314
           ++ L + FV    K + + EW  S   +  TLAR T AS+   +E
Sbjct: 617 IESLLAFFVPPRTKIEHVSEWGYSAAAKVMTLARQTRASLDYALE 661


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 90  WNKSVFYVNTNKKTEA--DSLQKLCADFNQISMLLED-NLIKVTIYVTVEN 233
           W KS+F+    K TE   DS   + ++    S L+ED NL  +   V +E+
Sbjct: 513 WGKSIFFEKLKKPTETFMDSKTDIPSEAPDNSKLVEDTNLHTINATVNIES 563


>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 414 IVKLKTYLNGKLACLKGTKRWREQQRPAFNQTSNRITKMYNHFH 283
           IV LKT    +L   K  K+ R +     N     I ++Y HFH
Sbjct: 114 IVALKTLHKSELVQSKIEKQVRREIEIQSNLRHKNILRLYGHFH 157


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 91  GTSPFSTSTQIKKPKRIRYKNYVQILIKSQCCWKI 195
           G  PF +   +  P+ +R K YVQ L++    W +
Sbjct: 318 GRLPFDSYPTLD-PENVRIKRYVQRLVRCDYTWHL 351


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 390 NGKLACLKGTKRWREQQRPAFNQTSNRITKMYNHF 286
           NG+         W  +Q P  +++   ++ MYNHF
Sbjct: 230 NGQRTLTVPVSVWDARQPPTSSRSGLPLSVMYNHF 264


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 100 PFSTSTQIKKPKRIRYKNYVQIL 168
           P +T  ++K  +R+R+KN V++L
Sbjct: 318 PITTVREVKILQRLRHKNIVRLL 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,597,008
Number of Sequences: 5004
Number of extensions: 28186
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)