Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6h19
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   4.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   6.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   6.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   6.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   6.2  

>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 97  SPFSTSTQIKKPKRIRYKNYVQILIKSQ 180
           +PF+T   +   K+ R K Y+ I  +++
Sbjct: 14  TPFTTQQLLSLEKKFREKQYLTIAERAE 41


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 197 FNQSNYLRNCRK 232
           +N +NY  NC+K
Sbjct: 100 YNNNNYNNNCKK 111


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 197 FNQSNYLRNCRK 232
           +N +NY  NC+K
Sbjct: 100 YNNNNYNNNCKK 111


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 197 FNQSNYLRNCRK 232
           +N +NY  NC+K
Sbjct: 100 YNNNNYNNNCKK 111


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 197 FNQSNYLRNCRK 232
           +N +NY  NC+K
Sbjct: 100 YNNNNYNNNCKK 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,652
Number of Sequences: 438
Number of extensions: 1721
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)