Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6h09
         (112 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...    42   6e-07
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    42   6e-07
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...    42   6e-07
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    42   6e-07

>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score = 41.9 bits (94), Expect = 6e-07
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E EP +T+ ++  KI
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKI 30


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 41.9 bits (94), Expect = 6e-07
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E EP +T+ ++  KI
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKI 30



 Score = 41.9 bits (94), Expect = 6e-07
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E EP +T+ ++  KI
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKI 106



 Score = 41.9 bits (94), Expect = 6e-07
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E EP +T+ ++  KI
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKI 182



 Score = 41.9 bits (94), Expect = 6e-07
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E EP +T+ ++  KI
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKI 258



 Score = 41.9 bits (94), Expect = 6e-07
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E EP +T+ ++  KI
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKI 334



 Score = 41.9 bits (94), Expect = 6e-07
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E EP +T+ ++  KI
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKI 410



 Score = 41.9 bits (94), Expect = 6e-07
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E EP +T+ ++  KI
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKI 486



 Score = 41.9 bits (94), Expect = 6e-07
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E EP +T+ ++  KI
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKI 562



 Score = 41.9 bits (94), Expect = 6e-07
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E EP +T+ ++  KI
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKI 638


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score = 41.9 bits (94), Expect = 6e-07
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E EP +T+ ++  KI
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKI 30


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 41.9 bits (94), Expect = 6e-07
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E EP +T+ ++  KI
Sbjct: 49  MQIFVKTLTGKTITLEVEPSDTIENVKAKI 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,191
Number of Sequences: 336
Number of extensions: 78
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 17
effective length of database: 116,873
effective search space used:  2220587
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)