Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6h09
         (112 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...    39   1e-04
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...    39   1e-04
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...    39   1e-04
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...    39   1e-04
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...    39   1e-04

>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 38.7 bits (86), Expect = 1e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKI 30


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 38.7 bits (86), Expect = 1e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKI 30


>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 38.7 bits (86), Expect = 1e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKI 30


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score = 38.7 bits (86), Expect = 1e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKI 30



 Score = 38.7 bits (86), Expect = 1e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKSKI 106



 Score = 38.7 bits (86), Expect = 1e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKI 182



 Score = 38.7 bits (86), Expect = 1e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKI 258



 Score = 38.7 bits (86), Expect = 1e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKI 334


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 38.7 bits (86), Expect = 1e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKI 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,446
Number of Sequences: 5004
Number of extensions: 933
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 18
effective length of database: 2,272,406
effective search space used: 40903308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)