Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6h09
         (112 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82083-1|CAB04967.1|  128|Caenorhabditis elegans Hypothetical pr...    39   5e-04
U23172-2|AAM22069.2|  538|Caenorhabditis elegans Ubiquitin prote...    39   5e-04
U23172-1|AAC46525.1|  838|Caenorhabditis elegans Ubiquitin prote...    39   5e-04
M23433-1|AAA28154.1|  838|Caenorhabditis elegans polyubiquitin p...    39   5e-04
M21321-1|AAA28153.1|   37|Caenorhabditis elegans protein ( C.ele...    39   5e-04
L31492-1|AAC37252.1|  128|Caenorhabditis elegans ubiquitin/ribos...    39   5e-04

>Z82083-1|CAB04967.1|  128|Caenorhabditis elegans Hypothetical
           protein ZK1010.1 protein.
          Length = 128

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 1   MQIFVKTLTGKTITLEVEASDTIENVKAKI 30


>U23172-2|AAM22069.2|  538|Caenorhabditis elegans Ubiquitin protein
           1, isoform c protein.
          Length = 538

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 1   MQIFVKTLTGKTITLEVEASDTIENVKAKI 30



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 77  MQIFVKTLTGKTITLEVEASDTIENVKAKI 106



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKI 182



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKI 258



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKI 334



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKI 486



 Score = 36.3 bits (80), Expect = 0.003
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TL GKTIT E E  +T+ ++  KI
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKI 410


>U23172-1|AAC46525.1|  838|Caenorhabditis elegans Ubiquitin protein
           1, isoform a protein.
          Length = 838

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 1   MQIFVKTLTGKTITLEVEASDTIENVKAKI 30



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 77  MQIFVKTLTGKTITLEVEASDTIENVKAKI 106



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKI 182



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKI 258



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKI 334



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKI 486



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKI 562



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKI 638



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKI 714



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKI 790



 Score = 36.3 bits (80), Expect = 0.003
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TL GKTIT E E  +T+ ++  KI
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKI 410


>M23433-1|AAA28154.1|  838|Caenorhabditis elegans polyubiquitin
           protein.
          Length = 838

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 1   MQIFVKTLTGKTITLEVEASDTIENVKAKI 30



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 77  MQIFVKTLTGKTITLEVEASDTIENVKAKI 106



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKI 182



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKI 258



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKI 334



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 381 MQIFVKTLTGKTITLEVEASDTIENVKAKI 410



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKI 486



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKI 562



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKI 638



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKI 714



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKI 790


>M21321-1|AAA28153.1|   37|Caenorhabditis elegans protein (
           C.elegans ubiquitin A(UbiA) gene, 5' end. ).
          Length = 37

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 1   MQIFVKTLTGKTITLEVEASDTIENVKAKI 30


>L31492-1|AAC37252.1|  128|Caenorhabditis elegans
           ubiquitin/ribosomal fusion protein protein.
          Length = 128

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 18  MQIFIXTLTGKTITAEAEPXETVADLXQKI 107
           MQIF+ TLTGKTIT E E  +T+ ++  KI
Sbjct: 1   MQIFVKTLTGKTITLEVEASDTIENVKAKI 30


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,228,521
Number of Sequences: 27780
Number of extensions: 5545
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 12,740,198
effective HSP length: 18
effective length of database: 12,240,158
effective search space used: 220322844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)