Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6h06
(491 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P17500 Cluster: Major capsid protein; n=15; Nucleopolyh... 197 1e-49
UniRef50_P35840 Cluster: Major capsid protein; n=12; Nucleopolyh... 144 7e-34
UniRef50_Q0N423 Cluster: VP39; n=1; Clanis bilineata nucleopolyh... 141 7e-33
UniRef50_Q8QLD5 Cluster: Vp39 capsid; n=1; Mamestra configurata ... 138 5e-32
UniRef50_Q80LM9 Cluster: Major capsid protein VP39; n=1; Adoxoph... 134 1e-30
UniRef50_Q9DWZ8 Cluster: VP39; n=2; Nucleopolyhedrovirus|Rep: VP... 113 2e-24
UniRef50_Q6QXM6 Cluster: ORF086; n=1; Agrotis segetum granulovir... 83 3e-15
UniRef50_Q9DVV4 Cluster: PxORF79 peptide; n=1; Plutella xylostel... 80 3e-14
UniRef50_Q7T9T4 Cluster: Vp39-capsid; n=5; Granulovirus|Rep: Vp3... 76 4e-13
UniRef50_Q9PYT2 Cluster: ORF111; n=4; Granulovirus|Rep: ORF111 -... 71 1e-11
UniRef50_Q8JRX1 Cluster: Capsid protein VP39; n=1; Phthorimaea o... 71 1e-11
UniRef50_Q0ZNY8 Cluster: Major viral capsid protein 39; n=3; Nuc... 56 4e-07
UniRef50_Q4V4E3 Cluster: IP10961p; n=4; Sophophora|Rep: IP10961p... 33 4.6
UniRef50_Q8YXH3 Cluster: Zam protein; n=6; Cyanobacteria|Rep: Za... 32 6.0
>UniRef50_P17500 Cluster: Major capsid protein; n=15;
Nucleopolyhedrovirus|Rep: Major capsid protein - Orgyia
pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
Length = 351
Score = 197 bits (480), Expect = 1e-49
Identities = 92/141 (65%), Positives = 109/141 (77%)
Frame = +3
Query: 60 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMS 239
MAL+ G++ R+ N CIF +I FD+C+TY+SPCS DA DDGWFIC+ HL RFKMS
Sbjct: 1 MALVSPGVSSRRS-TNHCIFGAIEPFDSCVTYRSPCSSDASVDDGWFICDYHLKLRFKMS 59
Query: 240 KMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQLIFHL 419
KMVLPI+DEDDNQ+K TIARHLVG+KERG+KRIL+P+ NY VFNL MM AEQLIFHL
Sbjct: 60 KMVLPIYDEDDNQYKRTIARHLVGHKERGVKRILVPTRANYMTVFNLPGMMLAEQLIFHL 119
Query: 420 IYNNEEAVNVICDNLKYTEGF 482
IY+N VN IC +LK E F
Sbjct: 120 IYDNRLEVNRICASLKNNENF 140
>UniRef50_P35840 Cluster: Major capsid protein; n=12;
Nucleopolyhedrovirus|Rep: Major capsid protein -
Lymantria dispar multicapsid nuclear polyhedrosis virus
(LdMNPV)
Length = 356
Score = 144 bits (350), Expect = 7e-34
Identities = 66/141 (46%), Positives = 93/141 (65%)
Frame = +3
Query: 60 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMS 239
MAL+ ++ ++R N C+F ++ FD C Y SPCSPD+ ++DGWFIC+ H RFK+
Sbjct: 1 MALVSGALSTNRLR-NYCVFGAVQPFDNCRAYGSPCSPDSTNNDGWFICDYHSSIRFKIE 59
Query: 240 KMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQLIFHL 419
KMVLPI D + N + T+ + LV +K G R+LIP+ NY+ V NLNSM AEQL+ H+
Sbjct: 60 KMVLPIPDAEGNIYNRTVGKSLVNHKTLGAARVLIPTRDNYKTVLNLNSMSLAEQLVTHM 119
Query: 420 IYNNEEAVNVICDNLKYTEGF 482
IY+N EA +C L++ E F
Sbjct: 120 IYDNVEAQGAVCKALQHNENF 140
>UniRef50_Q0N423 Cluster: VP39; n=1; Clanis bilineata
nucleopolyhedrosis virus|Rep: VP39 - Clanis bilineata
nucleopolyhedrosis virus
Length = 350
Score = 141 bits (342), Expect = 7e-33
Identities = 70/141 (49%), Positives = 90/141 (63%)
Frame = +3
Query: 60 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMS 239
MAL+ GMA ++ N CIF S+ FDAC Y+SPCS DA ++DGW IC+ HL RFKM
Sbjct: 1 MALVVSGMATGRIN-NYCIFGSVQPFDACGPYRSPCSDDAKNNDGWLICDYHLSTRFKME 59
Query: 240 KMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQLIFHL 419
KMVLPI D D T+AR LV +K G +RIL+P+ NY V N+ ++ AEQ IFH+
Sbjct: 60 KMVLPIPDADGTALNRTLARSLVNHKAIGDERILVPTKRNYMSVLNILALQLAEQYIFHI 119
Query: 420 IYNNEEAVNVICDNLKYTEGF 482
IY N+ IC L+ +E F
Sbjct: 120 IYENDVERERICQMLEISERF 140
>UniRef50_Q8QLD5 Cluster: Vp39 capsid; n=1; Mamestra configurata
NPV-A|Rep: Vp39 capsid - Mamestra configurata NPV-A
Length = 325
Score = 138 bits (335), Expect = 5e-32
Identities = 69/143 (48%), Positives = 87/143 (60%)
Frame = +3
Query: 60 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMS 239
MAL P G Q + N CIF +I FD C TY SPCS DA +DGWFIC HL RF+M
Sbjct: 1 MALTPYGS--NQPQSNNCIFGAIRPFDTCRTYSSPCSNDASQEDGWFICEYHLSIRFRME 58
Query: 240 KMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQLIFHL 419
KMVLPI D + + ++ + L+ E R+LIP+ TNY++V L SM EQLIFH+
Sbjct: 59 KMVLPIPDAEGTIYNRSVGKSLISGTES--NRVLIPTKTNYEDVLKLPSMSLPEQLIFHM 116
Query: 420 IYNNEEAVNVICDNLKYTEGFTS 488
IY+ + N IC L+Y E F S
Sbjct: 117 IYDEPDKQNEICKLLQYNENFHS 139
>UniRef50_Q80LM9 Cluster: Major capsid protein VP39; n=1; Adoxophyes
honmai NPV|Rep: Major capsid protein VP39 - Adoxophyes
honmai nucleopolyhedrovirus
Length = 312
Score = 134 bits (324), Expect = 1e-30
Identities = 65/141 (46%), Positives = 83/141 (58%)
Frame = +3
Query: 60 MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMS 239
MAL+P G+ + N CIFA + SFDAC Y + CS DA +DGW+IC H FKM
Sbjct: 1 MALVPAGLTSSRSNSN-CIFAGVQSFDACYRYPNECSKDADSNDGWYICEYHASVHFKME 59
Query: 240 KMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQLIFHL 419
KM L I D D+ T+ R LV + E G RIL+P+ NY+ V N+ + AE LI H+
Sbjct: 60 KMSLAIPDADNKVLFRTVGRSLVKHTEEGTARILVPNKNNYESVLNVQDLPLAEALIIHM 119
Query: 420 IYNNEEAVNVICDNLKYTEGF 482
IY N E IC+ LK+TE F
Sbjct: 120 IYENLEKQKEICERLKFTEHF 140
>UniRef50_Q9DWZ8 Cluster: VP39; n=2; Nucleopolyhedrovirus|Rep: VP39
- Spodoptera litura multicapsid nucleopolyhedrovirus
(SpltMNPV)
Length = 302
Score = 113 bits (273), Expect = 2e-24
Identities = 59/145 (40%), Positives = 83/145 (57%), Gaps = 2/145 (1%)
Frame = +3
Query: 60 MALMPVGMAPRQMRVNRCIFASI--VSFDACITYKSPCSPDAYHDDGWFICNSHLIKRFK 233
MAL+ G A +M+ N CIF + + F+ C Y+SPCS DA +DG F+C HL + FK
Sbjct: 1 MALVSGGNANSRMK-NYCIFQGVRPIEFNQCSNYRSPCSDDASQNDGVFMCQYHLSRFFK 59
Query: 234 MSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQLIF 413
+ K + I D + + + LV + R RILIP+ NYQ V N++ + AE+L+
Sbjct: 60 IEKTSIAIPDGTGQKLYRIVGKSLVSHNARANDRILIPTQENYQAVMNVSMLPPAERLVL 119
Query: 414 HLIYNNEEAVNVICDNLKYTEGFTS 488
HLIYNN A IC+ L+ E F S
Sbjct: 120 HLIYNNRTAAAEICNQLRQQENFRS 144
>UniRef50_Q6QXM6 Cluster: ORF086; n=1; Agrotis segetum
granulovirus|Rep: ORF086 - Agrotis segetum granulosis
virus (AsGV) (Agrotis segetumgranulovirus)
Length = 292
Score = 83.0 bits (196), Expect = 3e-15
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Frame = +3
Query: 105 NRCIFASIV--SFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMSKMVLPIFDEDDNQ 278
N CIF + F C Y+ PC Y+DDG FIC HL K FKM KMV+ I +
Sbjct: 12 NLCIFQGVQPPEFLNCRPYEPPCI-QPYNDDGTFICQYHLAKYFKMEKMVVRIGSGVGPE 70
Query: 279 FKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVICD 458
F M I + L+ +RI+IP +N+ + +M E+ +F+ IY ++ + +C
Sbjct: 71 FDMLIGKTLIQQNTEDARRIMIPLPSNFLTYLQVENMSATEKFVFYSIYERQDLIAELCR 130
Query: 459 NLKYTEGFT 485
L E +T
Sbjct: 131 GLVSQEYYT 139
>UniRef50_Q9DVV4 Cluster: PxORF79 peptide; n=1; Plutella xylostella
granulovirus|Rep: PxORF79 peptide - Plutella xylostella
granulovirus
Length = 320
Score = 79.8 bits (188), Expect = 3e-14
Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 8/143 (5%)
Frame = +3
Query: 81 MAPRQMRV-NRCIFASIVSFDA--CITYKSPCSPDAYHDDGWFICNSHLIKRFKMSKMVL 251
M+ RQ RV N CIF ++ ++ C CS DA +DDG FICN HL F + KM L
Sbjct: 2 MSLRQNRVYNNCIFQAVSYSNSSLCADPVLHCSKDASNDDGTFICNHHLSMYFPLEKMTL 61
Query: 252 PIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQLIFHLIYNN 431
I FK+ I + LV ++ + I+IPS NY + +N+M AE+ I + IY
Sbjct: 62 EIPSGTGTSFKLLIGKSLV--QQDATRNIIIPSKANYIDYLRVNNMSPAEKFIMYSIYGE 119
Query: 432 EEA-----VNVICDNLKYTEGFT 485
+ +C++L+ + +T
Sbjct: 120 SATEPTGLITQLCESLRSQDFYT 142
>UniRef50_Q7T9T4 Cluster: Vp39-capsid; n=5; Granulovirus|Rep:
Vp39-capsid - Adoxophyes orana granulovirus (AoGV)
Length = 291
Score = 76.2 bits (179), Expect = 4e-13
Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 7/143 (4%)
Frame = +3
Query: 75 VGMAPRQMRVNRCIFASIVS----FDACITYKSPCSPDAYHD--DGWFICNSHLIKRFKM 236
+ + P ++ N CIF +V + C Y SPCSPDA + DG FICN HL K FK+
Sbjct: 4 INVGPCELN-NYCIFQGVVGMMPDYYRCENYSSPCSPDASNSNLDGTFICNYHLNKYFKI 62
Query: 237 SKMVLPIFDEDDNQ-FKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQLIF 413
K I DN+ FKM + + L+ + + + +++ +S E++I
Sbjct: 63 LKSSFRIPSGKDNKSFKMLVGQSLLQQTDNDTNKNKVLIPLDHELYLKTSSRNSVERMII 122
Query: 414 HLIYNNEEAVNVICDNLKYTEGF 482
+ IYN++E + +CD L E F
Sbjct: 123 YTIYNDKEKIKDLCDILMKQEFF 145
>UniRef50_Q9PYT2 Cluster: ORF111; n=4; Granulovirus|Rep: ORF111 -
Xestia c-nigrum granulosis virus (XnGV) (Xestia
c-nigrumgranulovirus)
Length = 329
Score = 71.3 bits (167), Expect = 1e-11
Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Frame = +3
Query: 105 NRCIFASIV--SFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMSKMVLPIFDEDDN- 275
N CIF + F C Y PCS D + DG F+C+ HL + FK+ K V I +N
Sbjct: 16 NLCIFQGVQPPEFMNCGIYTPPCSDDCVNKDGTFVCSYHLARYFKLKKEVFEIPSGVNNT 75
Query: 276 QFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAV 443
FK + L+ RI IP+ NY N+ +M E+ +F+ IY+ + V
Sbjct: 76 SFKYLVGVSLIQQNVPTANRITIPAKDNYYSYLNVANMSSMEKYVFYSIYDEPDTV 131
>UniRef50_Q8JRX1 Cluster: Capsid protein VP39; n=1; Phthorimaea
operculella granulovirus|Rep: Capsid protein VP39 -
Phthorimaea operculella granulovirus
Length = 293
Score = 70.9 bits (166), Expect = 1e-11
Identities = 49/133 (36%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Frame = +3
Query: 105 NRCIFASI-VSFDACITYKSPCSPDAYHD--DGWFICNSHLIKRFKM--SKMVLPIFDED 269
N CIF + FD C Y CS DA + DG FICN HL K F++ SK +P D
Sbjct: 13 NYCIFQGVNYQFD-CDGYTRQCSEDARYSQLDGTFICNFHLGKYFRILKSKFEIPSGGVD 71
Query: 270 DNQFKMTIARHLVGNKERGI---KRILIP-SATNYQEVFNLNSMMQAEQLIFHLIYNNEE 437
+ FKM + + LV E+ KR+LIP S + + + S+M E+ +F+ IY +E+
Sbjct: 72 NRSFKMLVGQSLVPYAEKSTDPGKRLLIPMSVDDVRLAVSSRSLM--ERFVFYTIYEDED 129
Query: 438 AVNVICDNLKYTE 476
+ ICD + E
Sbjct: 130 KLKSICDEITNQE 142
>UniRef50_Q0ZNY8 Cluster: Major viral capsid protein 39; n=3;
Nucleopolyhedrovirus|Rep: Major viral capsid protein 39
- Neodiprion abietis nucleopolyhedrovirus
Length = 315
Score = 56.0 bits (129), Expect = 4e-07
Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Frame = +3
Query: 105 NRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMS-KMVLPIFDEDDNQF 281
N CIF D P + + G +IC HL F++S + + + D +
Sbjct: 28 NECIFRYARENDKLNQTIDPGYNCSNYLSGLYICQKHLEDYFRLSLRKINQLEGTDQGRV 87
Query: 282 --KMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVIC 455
++++ L N R+++P+ NY+++F + + + QL+FHL+Y N+ A++ IC
Sbjct: 88 FERLSVLSRLPHNYRN---RVIVPTRRNYEDIFKVAYLPISYQLVFHLLYQNQSAIDKIC 144
Query: 456 DNLK 467
++K
Sbjct: 145 QDVK 148
>UniRef50_Q4V4E3 Cluster: IP10961p; n=4; Sophophora|Rep: IP10961p -
Drosophila melanogaster (Fruit fly)
Length = 407
Score = 32.7 bits (71), Expect = 4.6
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 345 PSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEG 479
PS++ Y + +N+ M+ EQ + NN+ AV + N++++ G
Sbjct: 224 PSSSRYYQQYNIQQMIPHEQYVSDPDVNNDIAVLITASNIQWSRG 268
>UniRef50_Q8YXH3 Cluster: Zam protein; n=6; Cyanobacteria|Rep: Zam
protein - Anabaena sp. (strain PCC 7120)
Length = 783
Score = 32.3 bits (70), Expect = 6.0
Identities = 24/85 (28%), Positives = 43/85 (50%)
Frame = -2
Query: 286 ILN*LSSSSKMGKTIFDILKRLMRWLLQINHPSS*YASGEHGDLYVMHASNDTMDAKMQR 107
I+ L + + +G+ I + RL R LQ+N PS+ + G L + ++ + + +
Sbjct: 389 IIERLQNLTTIGQAIKE--SRLARGSLQLNLPSNQNPYYDEGSLGAVLVNDSPVRSLLME 446
Query: 106 LTLICRGAIPTGISAILLPL*IWTT 32
L L+ I T +SA+ +P IW T
Sbjct: 447 LVLLVNELIATHLSALGIPA-IWRT 470
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 479,493,906
Number of Sequences: 1657284
Number of extensions: 8877501
Number of successful extensions: 19958
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 19522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19946
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28437262108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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