Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6h02
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 30 1.8
06_01_0031 - 305457-305663,306248-306523,306824-307609 30 1.8
04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002 28 5.6
03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910... 28 5.6
01_06_1309 - 36170947-36171077,36171227-36172198,36172285-361724... 28 5.6
12_01_0911 + 8868557-8868664,8869415-8869420,8869774-8869928,887... 28 7.4
05_05_0097 - 22356209-22357227,22357314-22357445,22357537-223577... 28 7.4
12_02_0439 + 19096711-19096713,19096819-19096893,19097037-190971... 27 9.8
12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265,421... 27 9.8
01_01_0297 - 2437487-2437777,2438088-2438123 27 9.8
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 294 LTGSS-TLWWRTLFFFWRSTVYINIMLVP 211
+TG TLWW + F F R+TVY +++ P
Sbjct: 117 VTGQEGTLWWHSHFSFLRATVYGALIIKP 145
>06_01_0031 - 305457-305663,306248-306523,306824-307609
Length = 422
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Frame = +3
Query: 369 NTMIIQHENPKCP----IEFTYPETDMQSACSALLKN-RNGQSVPPPIKSNLRPIACEIP 533
NT+++ E KCP IE PE D + C A+ K G + + + A I
Sbjct: 227 NTVVVNKEQKKCPFSVKIEEIPPEEDNTAGCVAIRKAFALGNGKAKKKELSPQDAALLIQ 286
Query: 534 LSHFKELVESNDFLLCFNLETSTMVKILSLKTHFLHLS 647
L++ L + L C K+ +++ F ++S
Sbjct: 287 LNYRAHLAHRSQVLRCLRDLAVAKAKLKEIRSLFYNIS 324
>04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002
Length = 877
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 76 EETQKSDR*YKLESETGIPSRCICL 2
EE SD +KLE E+G PS C L
Sbjct: 817 EEANTSDHDHKLEIESGAPSSCFDL 841
>03_06_0520 -
34487664-34488274,34488785-34488974,34489585-34491045,
34491149-34491163
Length = 758
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/55 (32%), Positives = 21/55 (38%)
Frame = +3
Query: 405 PIEFTYPETDMQSACSALLKNRNGQSVPPPIKSNLRPIACEIPLSHFKELVESND 569
P+ P TD S CS LK N V P I + CE+ L ND
Sbjct: 529 PVSILEPPTDEDSCCSGYLK--NDSQVMPSIDKQI--YGCELRYEQEVSLSSDND 579
>01_06_1309 -
36170947-36171077,36171227-36172198,36172285-36172413,
36172535-36172779,36172904-36173055,36173202-36173306
Length = 577
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 300 WALTGS-STLWWRTLFFFWRSTVYINIMLVP 211
+ +TG TLWW + R+TVY I+++P
Sbjct: 118 YTITGQRGTLWWHAHISWLRATVYGPIIILP 148
>12_01_0911 +
8868557-8868664,8869415-8869420,8869774-8869928,
8870145-8871031,8871079-8871123,8872528-8872572,
8873025-8873513,8873603-8873733
Length = 621
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 279 TLWWRTLFFFWRSTVYINIMLVP 211
TLWW F R+TVY I+L P
Sbjct: 130 TLWWHAHISFLRATVYGAIVLNP 152
>05_05_0097 -
22356209-22357227,22357314-22357445,22357537-22357781,
22357870-22358015
Length = 513
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -2
Query: 300 WALTGS-STLWWRTLFFFWRSTVYINIMLVP 211
+ +TG TLWW F + R+T+Y ++++P
Sbjct: 81 FTVTGQRGTLWWHAHFSWLRATLYGPLVILP 111
>12_02_0439 +
19096711-19096713,19096819-19096893,19097037-19097111,
19097225-19097297,19097536-19097580,19098217-19098328,
19098794-19098866,19099178-19099222,19100216-19100271,
19100370-19100545,19101289-19101476
Length = 306
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 396 PKCPIEFTYPETDMQSACSALLKNRNGQSVPPPIKSNLRPIACEI 530
P C I + +D +S +KN NG++V P+ +L I+ E+
Sbjct: 10 PPCDISIAF--SDARSRKQIAVKNDNGRTVMVPVFQSLETISGEV 52
>12_01_0535 +
4208410-4208661,4209529-4209627,4210125-4210265,
4210378-4210560,4210664-4210821,4210905-4211004,
4211085-4211196,4211241-4211419,4211489-4211674,
4211762-4211929
Length = 525
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 347 QEHAKNARFARTDFGDGH*RVPVHYGGGRCFFF 249
QE A + D+G G ++P+HYG R +F
Sbjct: 240 QEFANQCFGNKLDYGKGR-QMPIHYGSNRLNYF 271
>01_01_0297 - 2437487-2437777,2438088-2438123
Length = 108
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 291 LMPITEIGAGETRVFSVLLTNNLFYCNTMIIQHENPKCPIEFTYPE 428
+M I +V L+ N + N + Q NPKCP +Y +
Sbjct: 24 IMGIVSEDVDTNKVSITQLSRNSKHINDTVFQTPNPKCPTTTSYAD 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,324,551
Number of Sequences: 37544
Number of extensions: 379652
Number of successful extensions: 1028
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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