Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6g19
(459 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 234 5e-63
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 233 7e-63
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 233 7e-63
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 126 2e-30
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 126 2e-30
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 78 7e-16
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 54 1e-08
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 44 1e-05
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 44 1e-05
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 43 2e-05
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 43 3e-05
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 30 0.014
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 32 0.048
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.15
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.20
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 29 0.26
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 28 0.60
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 1.4
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 1.8
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 3.2
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 4.2
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 5.6
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.3
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 9.7
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 24 9.7
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 234 bits (572), Expect = 5e-63
Identities = 108/115 (93%), Positives = 111/115 (96%)
Frame = +2
Query: 62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 241
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 242 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 406
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLI 115
Score = 32.3 bits (70), Expect = 0.037
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3
Query: 408 VXAGTGEFEAGISKNGQ 458
+ GTGEFEAGISK+GQ
Sbjct: 116 IGGGTGEFEAGISKDGQ 132
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 233 bits (571), Expect = 7e-63
Identities = 107/115 (93%), Positives = 111/115 (96%)
Frame = +2
Query: 62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 241
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 242 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 406
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILI 115
Score = 32.3 bits (70), Expect = 0.037
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3
Query: 408 VXAGTGEFEAGISKNGQ 458
+ GTGEFEAGISK+GQ
Sbjct: 116 IGGGTGEFEAGISKDGQ 132
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 233 bits (571), Expect = 7e-63
Identities = 107/115 (93%), Positives = 111/115 (96%)
Frame = +2
Query: 62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 241
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 242 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 406
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILI 115
Score = 32.3 bits (70), Expect = 0.037
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3
Query: 408 VXAGTGEFEAGISKNGQ 458
+ GTGEFEAGISK+GQ
Sbjct: 116 IGGGTGEFEAGISKDGQ 132
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 126 bits (304), Expect = 2e-30
Identities = 56/115 (48%), Positives = 79/115 (68%)
Frame = +2
Query: 74 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 253
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 254 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIRXCR 418
ERE+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+ R
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISAR 350
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 126 bits (303), Expect = 2e-30
Identities = 58/111 (52%), Positives = 76/111 (68%)
Frame = +2
Query: 74 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 253
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 254 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 406
ER RG+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLV 285
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 77.8 bits (183), Expect = 7e-16
Identities = 44/113 (38%), Positives = 63/113 (55%)
Frame = +2
Query: 68 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 247
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 248 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 406
E+ RGITI A ++ET+ + +D PGH D+IKNMITG + D A+++
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIV 146
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 54.0 bits (124), Expect = 1e-08
Identities = 36/107 (33%), Positives = 51/107 (47%)
Frame = +2
Query: 86 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 265
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 266 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 406
RGITI+ A F + +ID PGH DF + + D AV I
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAI 123
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 44.0 bits (99), Expect = 1e-05
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Frame = +2
Query: 62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 232
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 233 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 406
+ L AE D+ + + + V +ID+PGH DF + D A+++
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVV 128
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 44.0 bits (99), Expect = 1e-05
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Frame = +2
Query: 62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 232
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 233 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 406
+ L AE D+ + + + V +ID+PGH DF + D A+++
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVV 128
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 43.2 bits (97), Expect = 2e-05
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Frame = +2
Query: 86 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 265
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 266 RGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 406
RGIT+ ++ + Y + +ID PGH DF ++ + + +L+
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 42.7 bits (96), Expect = 3e-05
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Frame = +2
Query: 86 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 265
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 266 RGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDFIKNMITGTSQA 388
+GITI A W+ FE S Y + IID PGH DF +
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVL 169
Query: 389 DCAVLI 406
D AVL+
Sbjct: 170 DGAVLV 175
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 30.3 bits (65), Expect(2) = 0.014
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +2
Query: 209 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 382
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 383 QADCAVLI 406
AD VL+
Sbjct: 243 IADIVVLV 250
Score = 22.2 bits (45), Expect(2) = 0.014
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 89 IVVIGHVDSGKST 127
+ ++GHVD GK+T
Sbjct: 174 VTLMGHVDHGKTT 186
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 31.9 bits (69), Expect = 0.048
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Frame = +2
Query: 95 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGKGSFKYAWVLDKLKAERER 268
++GHVD+GK+ +L + +++ E Q++G F + K K ++
Sbjct: 489 ILGHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKK 541
Query: 269 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 406
G K + + + IID PGH F GTS + A+L+
Sbjct: 542 G--------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILV 579
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.15
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Frame = +2
Query: 86 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKGSFKYAWVLDKLKA 256
N ++ HVD GK+T L+ G I + T+ + E+ +G + K A
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRG------ITMKSSA 74
Query: 257 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 406
I K Y + +ID+PGH DF + + + D A ++
Sbjct: 75 ISLFFKVISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVL 124
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.20
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +2
Query: 242 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 364
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.5 bits (63), Expect = 0.26
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 279 IVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 151
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 171 IPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 28.3 bits (60), Expect = 0.60
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 317 YVTIIDAPGHRDFIKNMITGTSQADCAVLI 406
+V+ +D PGH + M+ G + D A+L+
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLL 138
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 1.4
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Frame = +2
Query: 86 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 265
+ +V GH+ GKS L+Y + + + S +Y D ERE
Sbjct: 142 SFIVAGHLHHGKSALLDLLVYYT-----------HPDTKPPKRRSLRYT---DTHYLERE 187
Query: 266 RGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 406
R ++I +A+ + + ID PGH DF+ + + +D VL+
Sbjct: 188 RVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLV 239
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 1.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 303 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 172
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 3.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 269 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWY 171
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 4.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -2
Query: 248 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 120
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 5.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 203 PGPPSRTSRWYVCQYHHIC 147
P PP +T + Y QY+ +C
Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26
>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 96
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 373 CDHVLDEISVSRSINDGNIVLASFEL 296
CDH+L IS SR G + FEL
Sbjct: 23 CDHLLQYISNSRDSKAGLKIFLVFEL 48
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 89 IVVIGHVDSGKSTTTGHLIYKC 154
IVV+G SGKST + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 9.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 92 VVIGHVDSGKSTTTGHLIYKCG 157
+V+GH GK+T +Y+ G
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAG 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,758,817
Number of Sequences: 5004
Number of extensions: 32999
Number of successful extensions: 133
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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