Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6g13
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 33 0.21
08_02_1571 - 27935756-27935950,27936048-27936199,27936294-279364... 30 1.5
08_02_1323 - 26136015-26137876,26138300-26139229,26139922-261400... 30 2.0
05_03_0627 - 16342211-16342264,16342332-16342412,16342751-163428... 30 2.0
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 29 2.6
11_05_0094 - 18995278-18995757,18995843-18996188,18996774-189968... 29 2.6
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 29 2.6
01_05_0592 - 23483834-23484285,23484357-23484455,23484534-234847... 29 2.6
07_01_0017 - 114497-114547,114700-114816,114917-114997,115312-11... 29 3.5
04_04_0181 - 23363893-23364458,23364548-23364626,23364749-233648... 28 6.0
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 28 6.0
01_03_0094 - 12470441-12471015,12471492-12471738,12472467-12473285 28 8.0
01_03_0091 + 12358475-12359293,12360022-12360268,12360745-12361319 28 8.0
>02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 314 ASNTAIRDLNGQAVKPLSGSAPSVR-VSALGSVSGNDETKDSKQPSKARQKK 466
A N +++ +N + L S P+ R S L S SG D++KDSK S + K
Sbjct: 2310 AENASLKTMNTDQLLDLFASTPASRKASVLPSSSGGDQSKDSKGKSGGKGLK 2361
>08_02_1571 -
27935756-27935950,27936048-27936199,27936294-27936403,
27936845-27937050,27937212-27937295,27937367-27937525,
27937621-27937728,27938103-27938278,27938376-27938462,
27938546-27938657,27938737-27938817,27938890-27938943,
27939107-27939183,27939262-27939331,27939552-27939666,
27939840-27939937,27940041-27940179,27940267-27940868,
27941270-27941399,27941471-27941529
Length = 937
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +2
Query: 251 LSCSKCNMVDNASFEHSDDSGASNTAIRDLNGQAVKPL--SGSAPSVRVSALGSV--SGN 418
+ C K N+VD A E+ SGA R+ G+ K L G + V LG V GN
Sbjct: 287 IKCGKLNLVDLAGSENISRSGAREGRAREA-GEINKSLLTLGRVITALVEHLGHVPYRGN 345
Query: 419 DETKDSKQPSKARQKK 466
E PSK QK+
Sbjct: 346 IEHFRLCSPSKEHQKQ 361
>08_02_1323 -
26136015-26137876,26138300-26139229,26139922-26140068,
26140139-26140360,26140513-26140555
Length = 1067
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/94 (21%), Positives = 43/94 (45%)
Frame = +2
Query: 170 TSRACRHMTSISNRFDIISKKQVHNM*LSCSKCNMVDNASFEHSDDSGASNTAIRDLNGQ 349
T R R + +II++ HN+ S CN+ + E D + + N I +++ +
Sbjct: 567 TVRGTRDFEEDTQNEEIIAEASSHNITAVQSTCNVEEKEQIEEFDSNSSCN-KIHEISSR 625
Query: 350 AVKPLSGSAPSVRVSALGSVSGNDETKDSKQPSK 451
V+ + +V + +V+ + E + KQ ++
Sbjct: 626 GVEETKLTDVNVETADEINVASSLENVEEKQSNR 659
>05_03_0627 -
16342211-16342264,16342332-16342412,16342751-16342849,
16343660-16343770,16343964-16344116,16344741-16344881,
16345456-16345513,16345852-16345967,16346292-16346405,
16346496-16346557,16348788-16348930,16349030-16349097,
16349200-16349379,16349835-16350013,16350447-16350636,
16350920-16350978,16351421-16351574,16352133-16352158,
16352567-16353014
Length = 811
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 353 VKPLSGSAPSVRVSALGSVSGNDETKDSKQPS 448
+KP S +P SA SV G+DE D+KQP+
Sbjct: 179 IKPNSPKSPVASASAFESVEGSDE-DDAKQPN 209
>12_01_0818 +
7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 201 YRTGSI*YQKNKCIICDCHVQSVIWLITHHLNTLTIPVQAILLFAT 338
Y S+ +K+ C+ C ++ ++ THH TLT+ V+++ L T
Sbjct: 777 YLQDSLLNEKHNCLSCGEPPEAHMYSYTHHNGTLTVLVKSLPLDVT 822
>11_05_0094 -
18995278-18995757,18995843-18996188,18996774-18996837,
18996924-18997078,18997377-18997618
Length = 428
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 402 PSADTRTDGADPDKGFTACPFRSRIAVLLAPESSECSNDALSTILHFEH 256
P++D T G++PDK P + V L ++ N+ STIL H
Sbjct: 354 PTSDEPTGGSNPDKKRKRTPALAEGEVALITNMTDSVNNVASTILATTH 402
>09_02_0203 -
5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 201 YRTGSI*YQKNKCIICDCHVQSVIWLITHHLNTLTIPVQAILLFAT 338
Y S+ +K+ C+ C ++ ++ THH TLT+ V+++ L T
Sbjct: 732 YLQDSLLNEKHSCLSCGEPPEAHMYSYTHHNGTLTVLVKSLPLDVT 777
>01_05_0592 -
23483834-23484285,23484357-23484455,23484534-23484702,
23485049-23485363,23485561-23485767,23485852-23486106,
23486575-23486736
Length = 552
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 208 VRYRCHVATST*SRVITEFRYIQNTTLQQAQTRILGHKTQHTI-FHIVDISAHEKPATSE 32
+ R T+T +++ ++ T Q +TR L KT+H + I ++S K A
Sbjct: 315 IHLRNEAKTATLEKLVGHLGTLEATRAQLHETRELARKTEHDLRDRIAELSGSSKAAKIT 374
Query: 31 LLPKRL 14
L KR+
Sbjct: 375 ELEKRI 380
>07_01_0017 -
114497-114547,114700-114816,114917-114997,115312-115371,
116029-116238,116412-116720,116790-117080
Length = 372
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 336 SRIAVLLAPESSECSNDALSTILHFEHDNHILCTCFFD--IISNLFDID 196
+R +LL ++ S L TIL HDN C FF + S++F ++
Sbjct: 188 TRAHILLIHHANLVSQPQLKTILSTVHDNGATCPVFFSKLVPSHIFQVN 236
>04_04_0181 -
23363893-23364458,23364548-23364626,23364749-23364818,
23367534-23367538
Length = 239
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 560 CLSNPRLRSSIWVFI*ESVCHTKALKSLNSRDKVEISTCAG 682
C+++ R IW+ + C +KALK ++ + V+ T AG
Sbjct: 20 CITSMRTEILIWIQLSSERCRSKALKVASTVNGVQSVTVAG 60
>02_05_0702 -
31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 645 FNDFKAFVWQTLSQMKTQIELLSLGLDRHETMMR 544
FND V Q + Q++ Q+ LLS LD+ + +R
Sbjct: 609 FNDINGLVQQNV-QLRNQVHLLSADLDKRDMELR 641
>01_03_0094 - 12470441-12471015,12471492-12471738,12472467-12473285
Length = 546
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 440 VCCLSSHRSRIQSPVPTRGLTEPILIKALRPVHLGRE*QYCL 315
+CC R+R+ +P P G + + R V R YCL
Sbjct: 121 ICCDCDARTRVATPPPPSGSLDHLNFPRRRSVEDSRHRGYCL 162
>01_03_0091 + 12358475-12359293,12360022-12360268,12360745-12361319
Length = 546
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 440 VCCLSSHRSRIQSPVPTRGLTEPILIKALRPVHLGRE*QYCL 315
+CC R+R+ +P P G + + R V R YCL
Sbjct: 121 ICCDCDARTRVATPPPPSGSLDHLNFPRRRSVEDSRHRGYCL 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,590,586
Number of Sequences: 37544
Number of extensions: 381545
Number of successful extensions: 1036
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -