Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6g13
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79603-4|CAB01894.1|  800|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ...    29   3.1  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    28   7.2  

>Z79603-4|CAB01894.1|  800|Caenorhabditis elegans Hypothetical
           protein M163.4 protein.
          Length = 800

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 113 CLCLLKCCVLNISKFGNYATSRACRHMTS 199
           CL LLK C   I +FG++ T +AC +MT+
Sbjct: 696 CLKLLKECNEGIEQFGSF-TEKACYYMTA 723


>Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical
           protein C05G5.2 protein.
          Length = 685

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 145 IQNTTLQQAQTRILGHKTQHTIFHIVDISAHEKPATSELLPK 20
           +  T++      ++GH     I  +  ++  EKPA S++LPK
Sbjct: 327 VVKTSISADPVIVIGHPKIEVIAAVATVAKTEKPAASKVLPK 368


>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
           protein F52G3.1 protein.
          Length = 1172

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -1

Query: 162 LPNLDIFKTQHFNKHRHES*GTKRNTQYSTSLIFLHTRNQQRANCCLNDYTNNS 1
           + N+D F+  +  K ++++   K+N Q S S +  HT+NQ +      D+  NS
Sbjct: 619 MENMDGFEEVNSKKKKNKTLAEKQNVQQSKSQLQNHTQNQSQNQS--QDHEKNS 670


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
            protein Y47G6A.17 protein.
          Length = 1736

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = -1

Query: 669  DISTLSREFNDFKAFVWQTLSQMKTQIELLSLGLDRHETMMRRKV 535
            ++        + KA     +   K Q+EL  + +DR++ ++R K+
Sbjct: 1131 NVDAFENRIKEIKASAQLAVQGYKEQLELKEIAIDRYKKLLREKI 1175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,530,283
Number of Sequences: 27780
Number of extensions: 352906
Number of successful extensions: 1006
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)