Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6g13
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    28   0.072
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    27   0.22 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    27   0.22 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    27   0.22 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   6.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.3  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   8.3  

>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 0.072
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
 Frame = -3

Query: 220 YIEPVRYRCHVATST*SRVITEFRYIQNTTLQQA---------QTRILGHKTQHTIFHI 71
           Y    R  CH+   +    + + RY  N  LQ           Q R+LGH+ +H+  H+
Sbjct: 144 YFPMDRQLCHIEIESFGYTMRDIRYKWNAGLQSVGISNEVELPQFRVLGHRQRHSTIHL 202


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 357 SLYQDRLRQSACRHWALYP 413
           +L ++R+RQ A  HW ++P
Sbjct: 65  ALMKERIRQKAAGHWVIHP 83


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 357 SLYQDRLRQSACRHWALYP 413
           +L ++R+RQ A  HW ++P
Sbjct: 65  ALMKERIRQKAAGHWVIHP 83


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 357 SLYQDRLRQSACRHWALYP 413
           +L ++R+RQ A  HW ++P
Sbjct: 65  ALMKERIRQKAAGHWVIHP 83


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 365 IKALRPVHLGRE*QYCLHRNRQSVQM 288
           +K    +H G +  +C H +RQ VQ+
Sbjct: 25  LKTHMRLHTGEKPYHCSHCDRQFVQV 50


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 102 GTKRNTQYSTSLIFLHTRNQQRANCCLN 19
           G   NTQ +  L+ L  RNQ   N  LN
Sbjct: 365 GRVNNTQRNEYLLALSDRNQNVLNNDLN 392


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 35  ARCWFLVCRNINDV 76
           AR W + CRNI  V
Sbjct: 116 ARFWLMDCRNIGAV 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,868
Number of Sequences: 438
Number of extensions: 4514
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)