Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6g12
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 35 0.011
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 31 0.23
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 1.6
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 27 2.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.7
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 26 4.9
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 26 6.5
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 6.5
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 26 6.5
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 25 8.6
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 25 8.6
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 8.6
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 25 8.6
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 8.6
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 25 8.6
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 35.1 bits (77), Expect = 0.011
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = +1
Query: 595 TIGTVPLVG--MAGQPVPTAPVPDSPSQPAILPVTP-GQPAN 711
T ++P V MAGQP+ APVP +P+Q A+ P+ P PAN
Sbjct: 222 TYYSIPAVNHPMAGQPIAIAPVP-APNQAALPPIPPQALPAN 262
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 30.7 bits (66), Expect = 0.23
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 634 PVPTAPVPDSPSQPAILPVTPGQPANIPATSGDS 735
P+ VPDSP+ PA P T ++ S DS
Sbjct: 206 PITVTAVPDSPNPPAATPATVADNDDLSIVSSDS 239
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 625 AGQPVPTAPVPDSPSQPAILPVTPGQPANIPATSGDSAP 741
AG P + +P PA +P+T G+ +P +S +AP
Sbjct: 1907 AGPPAGATAISGNPGMPAPVPLT-GKETAVPLSSMPNAP 1944
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 580 DKKYITIGTVPLVGMAGQPVPTAPVPDSPSQPAILPVTPGQP 705
DKK I ++P + A + + V S +I+P+ P +P
Sbjct: 965 DKKSSLIDSIPALSPAPSSLARSSVSSQRSSTSIIPIKPNKP 1006
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 634 PVPTAPVPDSPSQPAILPVTPGQPANIPATSGDSAP 741
P P+ P P S P I P P+++P + +AP
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 640 PTAPVPDSPSQPAILPVTPGQP-ANIPATSGDSAP 741
P+AP P +P Q + P T P +IP S SAP
Sbjct: 125 PSAPAPPTP-QSELRPPTSAPPRPSIPPPSPASAP 158
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = +1
Query: 634 PVPTAPVPDS----PSQPAILPVTPGQPANIPATSG 729
P T PVP S PS P +P + +IPA SG
Sbjct: 1046 PTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSG 1081
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 485 IGGISMFRFQCFVVPAGAGPSCSVKITSLIFFVADEGDVARYVTTFLKNI-FTR*SWTL 312
+GG+ + + + + PSC ++ + F A D Y+ +L+++ FT +W L
Sbjct: 341 VGGVILIAYSGYEMFIAPYPSCPRRVMNRTFITAVIIDFFYYLAGYLQSMYFTTYTWIL 399
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 25.8 bits (54), Expect = 6.5
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +1
Query: 229 LAVDVQAPVSGYCPGQVIPLKIDIENKSNVQLHLVKIFLRKVVTYRATSPSSATKKIKDV 408
L +VQ GQV+P+ V+ H +++FL + Y S +K K
Sbjct: 267 LHYEVQVGEKCVVMGQVVPVNFKFTLLGEVKFHKLRLFLME-RRYYYCRQRSVRRKEKTR 325
Query: 409 ILTLQEGPAP 438
L L E AP
Sbjct: 326 QLLLYERSAP 335
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 367 ATSPSSATKKIKDVILTLQEGPAPAGTTKHWNLNIEIPPIPPSNL 501
+TS S ++ + + + P+ N NI PP+PPSN+
Sbjct: 214 STSTSGSSSNVAAEVSN--DASQPSNQDSSLNSNIVKPPLPPSNV 256
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 6.5
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -1
Query: 147 QKHIRSFHSLFVLHNMYSIDYPNRY 73
+KH+++ HSL++ Y +D P+ +
Sbjct: 224 KKHMKASHSLYIPEREYLVDEPSLF 248
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 683 SMAGWLGESGTGAV 642
SMAGWLG + TG++
Sbjct: 14 SMAGWLGGADTGSI 27
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -3
Query: 289 SKVLLDLDSNQIQEPAHPLLKVVMRSKNSRTSFLIECGLVPRTFFGLSKTYSILP 125
+K+L L S+ E +L S + R + + L PR L+K+Y I P
Sbjct: 421 NKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRV-ANLAKSYLIEP 474
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/71 (19%), Positives = 28/71 (39%)
Frame = +1
Query: 445 TTKHWNLNIEIPPIPPSNLVNCNIIDLDYDLKVECVVSGMHLNMHDKKYITIGTVPLVGM 624
T W+ N+ P + ++ S +N KY+++GT+ L +
Sbjct: 146 TNDTWSTNLPTNPTTTAIYSTSGSSNITTPYSNRITNSNTSVNDITSKYLSVGTITLTTI 205
Query: 625 AGQPVPTAPVP 657
+G + T+ P
Sbjct: 206 SGSDLYTSTFP 216
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 289 KIDIENKSNVQLHLVKIFLRK 351
++D+ENK NV+ +IF RK
Sbjct: 508 EVDVENKQNVRTKYDRIFERK 528
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Frame = +1
Query: 595 TIGTVPLVGM----AGQPVP----TAPVPDSPSQPAILPVTPGQPANIPAT 723
T T+P + A QPV T+P+P +P + L VTP PA+
Sbjct: 577 TFDTLPTISQGLLAATQPVTSVLNTSPLPKTPEKDRSLNVTPSSSTPTPAS 627
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 598 IGTVPLVGMAGQPVPTAPVPDSPSQPA 678
+ + PL PVP +P+ SP++P+
Sbjct: 303 VSSYPLSRSVSTPVPMSPISISPAKPS 329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,477
Number of Sequences: 5004
Number of extensions: 76423
Number of successful extensions: 287
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -