Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6g12
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    27   0.18 
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    24   1.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
 Frame = -1

Query: 333 YKMKLDIALIFNVYFQRYYL-------TWTVTRYRSLHIHC 232
           Y   L++  I+ +Y  RY L       TWT+T Y  +++ C
Sbjct: 44  YYQNLNLGEIYYIYNPRYPLPYSGSKCTWTITSYHRINLKC 84


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 6/17 (35%), Positives = 15/17 (88%)
 Frame = +1

Query: 268 PGQVIPLKIDIENKSNV 318
           PG+++PL+ D+ N++++
Sbjct: 55  PGKLVPLQCDLSNQNDI 71


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +1

Query: 625 AGQPVPTAPVPDSPSQPAILPVTPGQPANIPATSGDSAP 741
           AG P+P  P   + S    LP  PG    +P     + P
Sbjct: 413 AGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGP 451


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 283  VLLDLDSNQIQEPAHPLL 230
            V L+LDS+   EP HP++
Sbjct: 979  VSLNLDSDLPVEPTHPII 996


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 620  VWPDSPCPL 646
            VWPD+ CP+
Sbjct: 1521 VWPDNGCPI 1529


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 620  VWPDSPCPL 646
            VWPD+ CP+
Sbjct: 1517 VWPDNGCPI 1525


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/53 (22%), Positives = 23/53 (43%)
 Frame = +3

Query: 48  KDMGLKEANIYLDNQWNTYYAGQTVNGRIEYVFDSPKKVRGTNPHSIRKDVLL 206
           + + LK   IY+DN     Y G  V   +  +  +   +   + H   +D++L
Sbjct: 302 RTLRLKGQMIYMDNWKMMMYLGTPVMPDLNALIATGLYINDLSMHDFSRDLML 354


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -1

Query: 459 PVFCSTGWSRTLLQCQNNVF 400
           P+F   G++  +L C  N++
Sbjct: 95  PIFKGIGYATCVLSCWTNIY 114


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -1

Query: 459 PVFCSTGWSRTLLQCQNNVF 400
           P+F   G++  +L C  N++
Sbjct: 148 PIFKGIGYATCVLSCWTNIY 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,060
Number of Sequences: 438
Number of extensions: 5852
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)