Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6g10
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.78 
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   4.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 130 NIGAV*NVGTHYLPNFKEPL 189
           ++GAV  VGT   P F+EPL
Sbjct: 456 DLGAVATVGTTVAPCFEEPL 475


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 112 WVRKCNNIGAV*NVGT 159
           W+  C NIGAV  + T
Sbjct: 119 WLMDCRNIGAVPKMAT 134


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 615 FLHNCLCANYWPISGVKQPVTMVLS 541
           +L  C     + ISG+K+P+  +L+
Sbjct: 140 YLAICHPLRVYTISGLKRPIRFILA 164


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 2   VSMSLSHLYGSPSWRKSFIF 61
           V+  LSH +G+P    SF F
Sbjct: 330 VAFMLSHPFGTPRIMSSFDF 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,147
Number of Sequences: 438
Number of extensions: 3493
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)