Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6g05
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...    42   6e-05
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ...    32   0.063
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   4.1  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    25   7.2  
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch...    25   9.5  

>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 41.9 bits (94), Expect = 6e-05
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +1

Query: 136 DGDTSLQSESSPAIKHPLEHTWSYWLY--TNKSKEWIHNLVELSTFATVEDYW 288
           +G +++ +E++    HPL+H W+ W      +  EW   L E+ +F TVE++W
Sbjct: 49  EGLSAVNAETAFVKTHPLQHEWTLWFLKPPTQGLEWSDLLKEIISFKTVEEFW 101


>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
           complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 218

 Score = 31.9 bits (69), Expect = 0.063
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 175 IKHPLEHTWSYWLYTNKSK--EWIHNLVELSTFATVEDYW 288
           +KHPL   W+ W     +   EW      + TF +VE++W
Sbjct: 36  LKHPLARPWTLWFLMPPTPGLEWNELQKNIITFNSVEEFW 75


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 145 YHHLASHVDWTVQTSLLIFFKI 80
           + H    V W+V TSLL FF I
Sbjct: 597 FSHKTISVSWSVLTSLLCFFTI 618


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 190 EHTWSYWLYTNKSKEWIH 243
           +H W+  +Y+NK + W+H
Sbjct: 189 DHVWTE-VYSNKQQRWVH 205


>SPAC23H4.08 |||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +2

Query: 143 ILVFNPSPRQQ*NILSSTLGATGFTQIRVKNGYTTW 250
           IL F+ SPR     L ST     F  IRV+ G+TT+
Sbjct: 118 ILSFS-SPRYTIQNLPSTQSNRVFDAIRVEQGHTTY 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,374
Number of Sequences: 5004
Number of extensions: 38375
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)