Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6g05
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068714-4|AAK68676.1|  251|Caenorhabditis elegans Initiation fa...    46   2e-05
AF068714-3|AAM22022.1|  250|Caenorhabditis elegans Initiation fa...    46   2e-05
AF068714-2|AAC17807.1|  248|Caenorhabditis elegans Initiation fa...    46   2e-05
Z81546-5|CAB04454.2|  212|Caenorhabditis elegans Hypothetical pr...    39   0.003
AL117195-24|CAB55035.1|  201|Caenorhabditis elegans Hypothetical...    36   0.025
AL117195-23|CAB60769.1|  240|Caenorhabditis elegans Hypothetical...    36   0.025
AF214652-1|AAF62415.1|  201|Caenorhabditis elegans translation i...    36   0.025
U41550-3|AAA83286.1|  228|Caenorhabditis elegans Initiation fact...    34   0.076
U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine rece...    28   3.8  
Z81579-1|CAB04655.1|  376|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AF068714-4|AAK68676.1|  251|Caenorhabditis elegans Initiation
           factor 4e (eif4e) familyprotein 3, isoform b protein.
          Length = 251

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +1

Query: 109 ALSSQHETRDGDTSLQSESSPAIKHPLEHTWSYW-LYTNKSKEWIHNLVELSTFATVEDY 285
           ALS+  +    D S+  E     +HPL++ W+ W L  +++KEW   L  +S F TVED+
Sbjct: 10  ALSASGDVNASDASVPPEL--LTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDF 67

Query: 286 W 288
           W
Sbjct: 68  W 68


>AF068714-3|AAM22022.1|  250|Caenorhabditis elegans Initiation
           factor 4e (eif4e) familyprotein 3, isoform c protein.
          Length = 250

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +1

Query: 109 ALSSQHETRDGDTSLQSESSPAIKHPLEHTWSYW-LYTNKSKEWIHNLVELSTFATVEDY 285
           ALS+  +    D S+  E     +HPL++ W+ W L  +++KEW   L  +S F TVED+
Sbjct: 10  ALSASGDVNASDASVPPEL--LTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDF 67

Query: 286 W 288
           W
Sbjct: 68  W 68


>AF068714-2|AAC17807.1|  248|Caenorhabditis elegans Initiation
           factor 4e (eif4e) familyprotein 3, isoform a protein.
          Length = 248

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +1

Query: 109 ALSSQHETRDGDTSLQSESSPAIKHPLEHTWSYW-LYTNKSKEWIHNLVELSTFATVEDY 285
           ALS+  +    D S+  E     +HPL++ W+ W L  +++KEW   L  +S F TVED+
Sbjct: 10  ALSASGDVNASDASVPPEL--LTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDF 67

Query: 286 W 288
           W
Sbjct: 68  W 68


>Z81546-5|CAB04454.2|  212|Caenorhabditis elegans Hypothetical
           protein F53A2.6 protein.
          Length = 212

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 154 QSESSPAIKHPLEHTWSYW-LYTNKSKEWIHNLVELSTFATVEDYW 288
           ++E + A  +PL+  W++W L   ++K W   L ++ TF TV ++W
Sbjct: 3   ETEQTTAPIYPLKRNWTWWYLNDERNKSWEDRLKKVYTFNTVSEFW 48


>AL117195-24|CAB55035.1|  201|Caenorhabditis elegans Hypothetical
           protein Y57A10A.30b protein.
          Length = 201

 Score = 35.5 bits (78), Expect = 0.025
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 181 HPLEHTWSYW-LYTNKSKEWIHNLVELSTFATVEDYW 288
           +PL+  WS+W L  +++  W   L ++ TF TV ++W
Sbjct: 9   YPLQRNWSWWFLNDDRNASWQDRLKKVYTFNTVPEFW 45


>AL117195-23|CAB60769.1|  240|Caenorhabditis elegans Hypothetical
           protein Y57A10A.30a protein.
          Length = 240

 Score = 35.5 bits (78), Expect = 0.025
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 181 HPLEHTWSYW-LYTNKSKEWIHNLVELSTFATVEDYW 288
           +PL+  WS+W L  +++  W   L ++ TF TV ++W
Sbjct: 48  YPLQRNWSWWFLNDDRNASWQDRLKKVYTFNTVPEFW 84


>AF214652-1|AAF62415.1|  201|Caenorhabditis elegans translation
           initiation factor eIF4Eisoform 5 protein.
          Length = 201

 Score = 35.5 bits (78), Expect = 0.025
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 181 HPLEHTWSYW-LYTNKSKEWIHNLVELSTFATVEDYW 288
           +PL+  WS+W L  +++  W   L ++ TF TV ++W
Sbjct: 9   YPLQRNWSWWFLNDDRNASWQDRLKKVYTFNTVPEFW 45


>U41550-3|AAA83286.1|  228|Caenorhabditis elegans Initiation factor
           4e (eif4e) familyprotein 2 protein.
          Length = 228

 Score = 33.9 bits (74), Expect = 0.076
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +1

Query: 175 IKHP---LEHTWSYW-LYTNKSKEWIHNLVELSTFATVEDYW 288
           I HP   L+  W++W L   ++K W   L  + TF++V ++W
Sbjct: 12  ISHPVYKLKRNWTWWYLNDERNKSWEERLKNVKTFSSVGEFW 53


>U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein36 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 345 SHRTYFSDLFTISSYVYLPPVIFYSSEC**FNQVVYPFFTLIC 217
           S++  F+ +F++   VY+ P+IF+ S     N     F  LIC
Sbjct: 44  SNQAIFNGVFSVVYLVYVVPMIFFDSSFMKLNVHHVAFILLIC 86


>Z81579-1|CAB04655.1|  376|Caenorhabditis elegans Hypothetical
           protein R13H4.3 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -1

Query: 220 LCKASSSKCAREDVLLLARTRIED*YHHLASHVDWTVQTSLLIFFKIRNHTIL--LSSLQ 47
           +CK ++ KCAR +V L+A+   E   ++   + D+  + S    FK  ++  +  L  +Q
Sbjct: 145 VCKPTAIKCARHEV-LVAQGDQESNAYYSVKYADFFSELSQTTGFKHCSYMDINGLFDIQ 203

Query: 46  RSNVKNLT 23
           R  + N+T
Sbjct: 204 RELIHNMT 211


>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
            protein Y102A11A.3 protein.
          Length = 1571

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +1

Query: 103  MSALSSQHETRDGDTSLQSESSPAIKHPLEHTWSYWLYTNKSKEWIHNLVELSTFA-TVE 279
            +S  SS   +   D  LQS     +   +E TW   +  N    W+H L E S+ A   E
Sbjct: 962  ISVTSSFSTSNTNDNDLQS----CVPLSIEETWDIEVGLNHFLNWLHGLSENSSDAGPTE 1017

Query: 280  DY 285
            D+
Sbjct: 1018 DF 1019


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,262,846
Number of Sequences: 27780
Number of extensions: 214377
Number of successful extensions: 471
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)