Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6g03
(617 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17; Eukary... 295 5e-79
UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209; Eukar... 266 3e-70
UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genom... 245 6e-64
UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein; ... 209 3e-53
UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2; Dictyos... 208 6e-53
UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3; ... 179 4e-44
UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1; Tet... 175 9e-43
UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep: An... 166 3e-40
UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168, w... 162 7e-39
UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n... 140 3e-32
UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia asia... 133 3e-30
UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal ... 131 1e-29
UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lambl... 123 4e-27
UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal ... 116 6e-25
UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4; ... 104 2e-21
UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillar... 100 3e-20
UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1; Encepha... 100 6e-20
UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2; Euryar... 76 6e-13
UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6; Euryar... 70 5e-11
UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1; Methan... 67 3e-10
UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4; Pyroba... 65 1e-09
UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2; enviro... 64 3e-09
UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12; Archa... 64 3e-09
UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1; Archae... 63 6e-09
UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2; Halorubrum... 60 5e-08
UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole geno... 59 7e-08
UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6; Methan... 58 2e-07
UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4; Haloba... 56 9e-07
UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1; Metallosph... 54 2e-06
UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1; Methanocor... 53 6e-06
UniRef50_A5UKY8 Cluster: Small subunit ribosomal protein S3Ae; n... 52 1e-05
UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured... 51 3e-05
UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiell... 50 6e-05
UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2; Thermoprot... 46 7e-04
UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S r... 42 0.016
UniRef50_Q6KYU3 Cluster: 30S ribosomal protein S3Ae; n=2; Thermo... 40 0.063
UniRef50_Q978Z2 Cluster: 30S ribosomal protein S3Ae; n=2; Thermo... 38 0.19
UniRef50_Q4SVA9 Cluster: Chromosome undetermined SCAF13769, whol... 34 3.1
UniRef50_Q74N14 Cluster: 30S ribosomal protein S3Ae; n=2; Nanoar... 34 3.1
UniRef50_Q119K9 Cluster: Putative uncharacterized protein precur... 33 5.5
UniRef50_A0YI31 Cluster: DNA mismatch repair protein; n=5; Cyano... 33 5.5
UniRef50_Q4P2U9 Cluster: Putative uncharacterized protein; n=1; ... 33 5.5
UniRef50_Q0KDB8 Cluster: L-Amino-acid oxidase; n=3; cellular org... 33 7.2
UniRef50_Q01HQ6 Cluster: OSIGBa0153E02-OSIGBa0093I20.19 protein;... 32 9.5
>UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17;
Eukaryota|Rep: 40S ribosomal protein S3a - Anopheles
gambiae (African malaria mosquito)
Length = 269
Score = 295 bits (724), Expect = 5e-79
Identities = 137/178 (76%), Positives = 159/178 (89%)
Frame = +3
Query: 84 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 263
+VDPFTRKDWYDVKAP+MF RQVG TLVNRTQGTKIAS+GLKGRVFEVSLADLQ + DA
Sbjct: 21 VVDPFTRKDWYDVKAPNMFKNRQVGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDA 80
Query: 264 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 443
ERSFRKF+L+AE V GR+VL NFHGM LTTDKLR MVKKWQTLIE ++DVKTTDG++LRV
Sbjct: 81 ERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVKKWQTLIECSVDVKTTDGFMLRV 140
Query: 444 FCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 617
FCIGFT KDS+SQRKTCYAQH+Q++ IR KM II R++T+++L+ VV KL+PDSIAK
Sbjct: 141 FCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAK 198
>UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209;
Eukaryota|Rep: 40S ribosomal protein S3a - Homo sapiens
(Human)
Length = 264
Score = 266 bits (652), Expect = 3e-70
Identities = 127/178 (71%), Positives = 150/178 (84%)
Frame = +3
Query: 84 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 263
+VDPF++KDWYDVKAP+MF+ R +G TLV RTQGTKIAS+GLKGRVFEVSLADLQ D
Sbjct: 21 VVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQND--- 77
Query: 264 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 443
E +FRKF+LI E VQG+N L NFHGMDLT DK+ MVKKWQT+IEA++DVKTTDGY+LR+
Sbjct: 78 EVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRL 137
Query: 444 FCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 617
FC+GFT K + RKT YAQH QVR IRKKM EI+TR+V ++L+EVVNKLIPDSI K
Sbjct: 138 FCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGK 195
>UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=3; core eudicotyledons|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 656
Score = 245 bits (600), Expect = 6e-64
Identities = 117/176 (66%), Positives = 141/176 (80%)
Frame = +3
Query: 90 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 269
DPF +KDWYD+KAPS+F R VG TLV+RTQGTKIASEGLK RVFE+SLADLQAD D +
Sbjct: 417 DPFAKKDWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQADED--Q 474
Query: 270 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 449
++RK RL AE VQGRNVL NF GMD TTDKLR +V+KWQTLIEA++DVKTTD Y LR+FC
Sbjct: 475 AYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFC 534
Query: 450 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 617
I FT K +KTCYAQ +Q+R IR+KM EI+T T+ +L+E+V K IP+SI +
Sbjct: 535 IAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGR 590
>UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein;
n=9; Dikarya|Rep: 40S ribosomal protein S1-like protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 256
Score = 209 bits (511), Expect = 3e-53
Identities = 99/176 (56%), Positives = 130/176 (73%)
Frame = +3
Query: 90 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 269
DPF RKDWY +KAP+ F+ R VG TLVNR+ G K A++ LKGR+FEVSLADLQ D D
Sbjct: 22 DPFARKDWYGIKAPAPFNIRDVGKTLVNRSSGMKNANDALKGRIFEVSLADLQKDED--H 79
Query: 270 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 449
+FRK +L + VQG+N L NFHG+D T+DKLR +V+KWQ+LIEAN+ VKTTD Y+LR+F
Sbjct: 80 AFRKIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFA 139
Query: 450 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 617
I T + +KT YA +Q+RAIR+KM EII R+ + L+++ NKLIP+ I +
Sbjct: 140 IAVTKRRPNQIKKTTYAASSQIRAIRRKMTEIIQREASTCTLQQLTNKLIPEVIGR 195
>UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2;
Dictyostelium discoideum|Rep: 40S ribosomal protein S3A
- Dictyostelium discoideum AX4
Length = 273
Score = 208 bits (509), Expect = 6e-53
Identities = 105/179 (58%), Positives = 137/179 (76%), Gaps = 4/179 (2%)
Frame = +3
Query: 87 VDPFTRKDWYDVKAPSMFSK----RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQAD 254
VDPFTRK+WY V+AP+ F K +VG T VNRTQGTK+AS+GLKGRV+EVSLAD++
Sbjct: 16 VDPFTRKEWYVVRAPTQFFKSPADNKVGFTPVNRTQGTKLASDGLKGRVYEVSLADMK-- 73
Query: 255 TDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYV 434
D + FRK +L AE V+GRNVL NF+GMDLT+DKLR ++ KW TLIE +DVKTTDGY
Sbjct: 74 DDESQVFRKIKLRAEEVEGRNVLTNFYGMDLTSDKLRSLIHKWSTLIECFVDVKTTDGYF 133
Query: 435 LRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSI 611
LRVF I FT K ++KT YA+ ++V+AIRKKM +I+T V++++L+ VV+ LI S+
Sbjct: 134 LRVFAICFTKKGESQKKKTSYAKTSRVKAIRKKMVDILTETVSSNDLKTVVDYLIGVSL 192
>UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S3a - Entamoeba histolytica HM-1:IMSS
Length = 257
Score = 179 bits (436), Expect = 4e-44
Identities = 87/171 (50%), Positives = 121/171 (70%)
Frame = +3
Query: 84 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 263
I +PF++K+WY+VK P F +R VG +VN+T GT+IASE LKGRV EV+LADL +
Sbjct: 22 IAEPFSKKEWYNVKVPKNFKRRTVGQIVVNKTAGTRIASEQLKGRVVEVNLADLMENEKF 81
Query: 264 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 443
KF+ E V G++ L FHG+ LTTDKLR +VKKW TLIE ++DVKTTDG+++R+
Sbjct: 82 GAYNYKFK--CEDVNGKDCLMIFHGLKLTTDKLRSIVKKWCTLIETSVDVKTTDGHLIRI 139
Query: 444 FCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKL 596
FCIGFT++ S +KT YA+ Q++ IRK M +IT++ + EL + V+ L
Sbjct: 140 FCIGFTSRKSNQIKKTSYAKSAQIKKIRKIMNNLITKEAASRELTQFVDYL 190
>UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal S3Ae family
protein - Tetrahymena thermophila SB210
Length = 265
Score = 175 bits (425), Expect = 9e-43
Identities = 83/180 (46%), Positives = 119/180 (66%), Gaps = 3/180 (1%)
Frame = +3
Query: 87 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 266
+DP +RK+WYD +AP FS + G TLV ++ G +IASE +KGRV E +LADL+ D +
Sbjct: 23 IDPLSRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLK-DNSND 81
Query: 267 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 446
+++RK +L+ + V GRN +F+G+D+T D+L M++KWQTLIEA +D KT DGY++RVF
Sbjct: 82 KAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVF 141
Query: 447 CIGFTNKDSL---SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 617
+ FT K S S TCYA+ +QVRAIR+K+ IT + + E LI + K
Sbjct: 142 TLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTK 201
>UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep:
Antigen - Leishmania major
Length = 264
Score = 166 bits (404), Expect = 3e-40
Identities = 72/169 (42%), Positives = 113/169 (66%)
Frame = +3
Query: 90 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 269
+ RK+WYDV AP+ F KRQ T+ N+TQGT+IA++ L+GRVFE +LADL E
Sbjct: 23 ETMARKEWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEE 82
Query: 270 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 449
++RK R + VQGRN+L FH M++TTDK+ +++KW T +E ++VKT DGY +R+F
Sbjct: 83 AYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMANLLRKWCTTMETTVEVKTADGYTMRLFV 142
Query: 450 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKL 596
+ FT + Q + CYA+ V+ +R ++ ++I R ++ +++E V+ L
Sbjct: 143 VAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLL 191
>UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_168,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 291
Score = 162 bits (393), Expect = 7e-39
Identities = 74/177 (41%), Positives = 118/177 (66%)
Frame = +3
Query: 87 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 266
+DP RK+W+++ AP F+ G T +N++ GT +A+E +KGRV E SLADLQ +D +
Sbjct: 19 IDPLARKEWFELTAPVPFAAGGFGYTCINKSAGTVVATEAIKGRVVEASLADLQGQSD-Q 77
Query: 267 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 446
++RK +LI + V+G +F+G+D T DK+ M+KK QTLIE ++ ++ DGY+LR+F
Sbjct: 78 MAWRKVKLIIDDVEGTRCRTSFYGLDSTKDKIFGMIKKRQTLIETQVEARSQDGYILRIF 137
Query: 447 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 617
I FT QRKT YAQ +Q++ IRKK+ EI+ ++V+ + +++ +S+AK
Sbjct: 138 VIAFTKSIKNQQRKTTYAQRSQIKDIRKKIVEIVLKEVSKKSITQLLGFFNQESLAK 194
>UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n=1;
Rattus norvegicus|Rep: UPI00005042B8 UniRef100 entry -
Rattus norvegicus
Length = 237
Score = 140 bits (338), Expect = 3e-32
Identities = 82/173 (47%), Positives = 112/173 (64%), Gaps = 1/173 (0%)
Frame = +3
Query: 102 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 281
+KD YDVKA +MF+ R +G T V R Q TK+ S GL G VFE SLA LQ D + RK
Sbjct: 12 KKDRYDVKALTMFNVRNIGKTQVLRKQETKMVSVGLNGLVFEASLASLQND---KVVVRK 68
Query: 282 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGF- 458
F+LI E ++G+N L N +GMDLT DK V KWQ ++EA+ DVKT D Y+L +FC+G+
Sbjct: 69 FKLITEDMRGKNGLTNSYGMDLTWDKRCNKVIKWQ-MVEAHADVKTADYYLLCLFCVGYT 127
Query: 459 TNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 617
TN + R+ AQ+ QV I +I+ D ++L+EV+NKL+PD++ K
Sbjct: 128 TNVTTRYARQLVCAQYQQVHQIWLITIQIM--DQRRTDLKEVLNKLVPDNVGK 178
>UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia
asiatica|Rep: Ribosomal protein S3a - Taenia asiatica
(Asian tapeworm)
Length = 183
Score = 133 bits (322), Expect = 3e-30
Identities = 64/115 (55%), Positives = 82/115 (71%)
Frame = +3
Query: 273 FRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 452
FRKF+L E VQGR+ L NFHGMDLT DKL MV KWQ+ IEA++DVKTTDGY LR F I
Sbjct: 7 FRKFKLQVEDVQGRHCLTNFHGMDLTHDKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVI 66
Query: 453 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 617
FT K Q+ YAQ T+++ +R ++ E++ R+V +L+ VV KLIPDSI +
Sbjct: 67 AFTKKQE-DQKSHAYAQTTRIKKLRAEIVEVVQREVARCDLKSVVQKLIPDSIGQ 120
>UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal
protein S3a isoform 5; n=18; Eutheria|Rep: PREDICTED:
similar to ribosomal protein S3a isoform 5 - Homo
sapiens
Length = 211
Score = 131 bits (317), Expect = 1e-29
Identities = 68/114 (59%), Positives = 85/114 (74%)
Frame = +3
Query: 84 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 263
+VDPF++KDWYDV AP+MF+ R +G TLV RTQGTKIAS+ GRVFEVSLADLQ D
Sbjct: 21 VVDPFSKKDWYDVNAPAMFNIRNIGKTLVTRTQGTKIASD---GRVFEVSLADLQND--- 74
Query: 264 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTD 425
E +FRKF+LI E VQG+N L NFHG+DLT+DK+ ++K I +V+T D
Sbjct: 75 EVAFRKFKLITEDVQGKNCLTNFHGVDLTSDKITSQIRKKMMEIMTR-EVQTND 127
Score = 50.4 bits (115), Expect = 3e-05
Identities = 23/32 (71%), Positives = 28/32 (87%)
Frame = +3
Query: 522 IRKKMCEIITRDVTNSELREVVNKLIPDSIAK 617
IRKKM EI+TR+V ++L+EVVNKLIPDSI K
Sbjct: 111 IRKKMMEIMTREVQTNDLKEVVNKLIPDSIGK 142
>UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_675_17761_17015 - Giardia lamblia
ATCC 50803
Length = 248
Score = 123 bits (296), Expect = 4e-27
Identities = 60/169 (35%), Positives = 95/169 (56%)
Frame = +3
Query: 90 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 269
DP+ +K+WY V AP+ F R +G T V +T G ++A++ + RV+EV+L DL +
Sbjct: 20 DPYLKKEWYPVIAPAHFKSRHIGQTPVTKTAGLRVATDVINHRVYEVNLGDLNPGAEDLN 79
Query: 270 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 449
KF L + V L NFHGMD+T K + +K I+ +D+ TTDGY+LRVF
Sbjct: 80 GNTKFYLQTQLVSDGKCLTNFHGMDITRHKYGSLFRKGCDCIDVFMDIPTTDGYLLRVFV 139
Query: 450 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKL 596
I FT++ +RK C+ + +R +R + E + ++ + +V KL
Sbjct: 140 IAFTDRFRFQRRKNCHVKGRVIRMMRAGIYETLHNELGKVSIPVLVTKL 188
>UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal
protein S3a; n=1; Equus caballus|Rep: PREDICTED: similar
to ribosomal protein S3a - Equus caballus
Length = 153
Score = 116 bits (278), Expect = 6e-25
Identities = 57/90 (63%), Positives = 69/90 (76%)
Frame = +3
Query: 87 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 266
VD ++KDWYD+KAP+MF+ R +G TLV RTQGTKIAS+GLKG VFE+SLADLQ D E
Sbjct: 22 VDQISKKDWYDMKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGGVFEMSLADLQND---E 78
Query: 267 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTD 356
+FRKF+LI E VQG+ L NF M L+ D
Sbjct: 79 VAFRKFKLITEDVQGKRCLINFRSMGLSCD 108
>UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3Ae,
putative - Trichomonas vaginalis G3
Length = 247
Score = 104 bits (249), Expect = 2e-21
Identities = 57/175 (32%), Positives = 96/175 (54%), Gaps = 1/175 (0%)
Frame = +3
Query: 90 DPFTRKDWYDVKAPSMFS-KRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 266
D F +K+W V P+ F+ KR +G T+ N+ ++ + + RV+E+S AD+ D
Sbjct: 18 DSFIKKEWRHVLVPAYFTGKRDIGVTVSNKCARGRVPMDYVNNRVWELSHADMVNDLSHA 77
Query: 267 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 446
+R IA G V F GM LT DKL +++K++T+I+A++D KT DG++LR+F
Sbjct: 78 YRLFSWRSIAA---GSEVYTQFAGMRLTHDKLDSIMRKYRTMIDASVDAKTADGFILRLF 134
Query: 447 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSI 611
IGFT K + S + YA + R +R M + +T + + ++ + + I
Sbjct: 135 TIGFTKKLANSHKNHTYANSHKARQVRDVMIKALTDACEANGVEQLCKDFVDEKI 189
>UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillardia
theta|Rep: 40S ribosomal Protein S3a - Guillardia theta
(Cryptomonas phi)
Length = 219
Score = 100 bits (239), Expect = 3e-20
Identities = 50/169 (29%), Positives = 93/169 (55%)
Frame = +3
Query: 90 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 269
D +R++ V AP +F + +G TL+ + + + ++++VSLAD+ E
Sbjct: 19 DVNSRQELIKVYAPDIFDSKLIGKTLIKKRNPAD-ENSSVDNKIYQVSLADILGKE--EF 75
Query: 270 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 449
S F + + FHG+ LT DK+ ++KKW TLIE ++ KT DGY L++F
Sbjct: 76 SSINFNFKSLKIFNNECFTKFHGLTLTRDKICSLIKKWHTLIEVEVNFKTKDGYFLKLFL 135
Query: 450 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKL 596
I + K + KT Y +Q RA+R+++ +II ++ N ++++ ++++
Sbjct: 136 IAQSKKPKNMKSKTVYINSSQKRALRRRITDIIIKEGINMDIKDFIHRI 184
>UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S3A
- Encephalitozoon cuniculi
Length = 189
Score = 99.5 bits (237), Expect = 6e-20
Identities = 49/135 (36%), Positives = 81/135 (60%)
Frame = +3
Query: 213 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 392
GR ++V+ ADL + D RKF ++G + F GM+LT+DK + M+KKW TL
Sbjct: 15 GRRYDVNQADLTGNNDV--GHRKFIFKIGDIKGSECVGFFDGMELTSDKHKAMIKKWHTL 72
Query: 393 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 572
IEA D+ DG V RVF +G T + +KTCY +H+ + IRK M ++I +++ +
Sbjct: 73 IEAQKDIVAKDGSVFRVFVMGVTRRHPGYVKKTCYVKHSDEKKIRKIMFDVIEEELSGCD 132
Query: 573 LREVVNKLIPDSIAK 617
+++++ KL +++ K
Sbjct: 133 VQKIMKKLANETVGK 147
>UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S3AE -
Uncultured methanogenic archaeon RC-I
Length = 225
Score = 76.2 bits (179), Expect = 6e-13
Identities = 54/176 (30%), Positives = 89/176 (50%)
Frame = +3
Query: 87 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 266
VD F K+WY V AP+ F++ +G TL + G I GRV E +L D+ D +
Sbjct: 9 VDAFRAKNWYQVIAPAEFNRANIGETLAD-DPGKMI------GRVMESTLGDVTGDWTKQ 61
Query: 267 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 446
FR+ E + G + +F G +LT D +R +VK+ + I+AN+ V T DG+ +RV
Sbjct: 62 NIKMIFRI--EEIGGNSAYTSFLGHELTRDYMRSLVKRRTSKIDANVVVTTKDGFKVRVK 119
Query: 447 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIA 614
I T K A+ +Q+ +IR+ M ++ + E +N+++ +A
Sbjct: 120 PIVLTVK---------RARTSQIESIRQIMINVVNKRGAELGFTEFINEVVTGKVA 166
>UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S3Ae -
Methanosarcina mazei (Methanosarcina frisia)
Length = 204
Score = 69.7 bits (163), Expect = 5e-11
Identities = 50/171 (29%), Positives = 89/171 (52%)
Frame = +3
Query: 87 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 266
+D + K+WY+++AP+ ++ VGTT+ L GR E ++ +L D
Sbjct: 10 LDGWKSKEWYNIEAPAYLNRVIVGTTMAGDPSL-------LVGRNVETTVGELT--NDMT 60
Query: 267 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 446
++ K L V G + G +LTTD +R +VK+ + I+AN+DV+T DG+V+RV
Sbjct: 61 KNNTKVILRVNNVVGDIATTDLMGHELTTDYVRSIVKRQTSRIDANVDVRTKDGFVIRVK 120
Query: 447 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLI 599
FT K A+ +Q++AIR+ M +I+ + + ++ + + I
Sbjct: 121 PTCFTIK---------RARSSQMQAIREMMVDIVKKRASETDFETFMQEAI 162
>UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3Ae -
Methanopyrus kandleri
Length = 211
Score = 67.3 bits (157), Expect = 3e-10
Identities = 52/170 (30%), Positives = 79/170 (46%)
Frame = +3
Query: 90 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 269
D + K WY + AP MF +VG T + E + GRV E +L D+ D
Sbjct: 4 DKWKDKVWYTILAPDMFDNVEVGETPADDP-------EKVIGRVLETTLGDVLDDITKHH 56
Query: 270 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 449
FR+ V+G F G L D +R +V++ + I+ IDV T DGY +RV
Sbjct: 57 IKVFFRIYD--VEGTTAYSKFEGHRLMRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAG 114
Query: 450 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLI 599
+ FT T A+ +Q RAIRK+M ++I + + E + + +
Sbjct: 115 LAFT---------TRRAKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCL 155
>UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S3Ae -
Pyrobaculum aerophilum
Length = 221
Score = 64.9 bits (151), Expect = 1e-09
Identities = 49/175 (28%), Positives = 81/175 (46%)
Frame = +3
Query: 90 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 269
DP+ K W+ V APS + N Q L R EVSL D+ D
Sbjct: 20 DPWALKKWFSVYAPSYLGGVFLAEVPANEAQK-------LLMRTLEVSLYDITKDISHLP 72
Query: 270 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 449
KF++ V+G L F G++LT D +R +V+K + + A +VKT DG V+R+
Sbjct: 73 IKLKFQI--HRVEGLKALTRFKGLELTRDYIRSLVRKGTSKVTAITEVKTKDGMVMRIAV 130
Query: 450 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIA 614
+G T + +K+ A+RKKM E + + + + + +++ ++A
Sbjct: 131 LGITTHRIGTAQKS---------AMRKKMIETLVKKAAELDSGQFLKEILEGTLA 176
>UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2;
environmental samples|Rep: SSU ribosomal protein S3AE -
uncultured euryarchaeote Alv-FOS1
Length = 227
Score = 64.1 bits (149), Expect = 3e-09
Identities = 51/172 (29%), Positives = 80/172 (46%)
Frame = +3
Query: 90 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 269
D + K WY + P FS +++G T + K+ GRV E +L DL +
Sbjct: 15 DKWRSKVWYTIITPETFSSKEIGMTPADDPD--KVI-----GRVAESTLYDLSGNFKKMH 67
Query: 270 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 449
F++ VQG N F G D+TTD +R M+++ ++ I+ +V+T+DGY +RV
Sbjct: 68 VKLYFKI--NRVQGTNAYTRFIGHDMTTDYIRRMIRRRRSRIDMIFNVETSDGYRMRVKV 125
Query: 450 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPD 605
+ ++ S KT IRKK+ E +T E V +I D
Sbjct: 126 LTVPDRRIKSSIKT---------EIRKKIQEYLTEKARAMTFSEYVKYIISD 168
>UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12;
Archaea|Rep: 30S ribosomal protein S3Ae - Aeropyrum
pernix
Length = 214
Score = 64.1 bits (149), Expect = 3e-09
Identities = 50/172 (29%), Positives = 81/172 (47%)
Frame = +3
Query: 84 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 263
I D + K W+ V AP +F + +GTT + + L GRV E +L D+ D
Sbjct: 6 IRDTWRLKKWFKVVAPPLFGETVLGTTPADDP-------DKLIGRVMETTLFDITGDYSY 58
Query: 264 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 443
F+++ V+G F G +L D +R + ++ + + +V T DGY LRV
Sbjct: 59 VHVKMYFQVVR--VEGDTAYTRFKGHELLRDYIRGLTRRKSSKVTGIFNVWTKDGYGLRV 116
Query: 444 FCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLI 599
+ FT R+ C + +Q AIRK M EI+ + S L E++ ++
Sbjct: 117 TAMAFT-------RQRC--KTSQKSAIRKVMQEIVEQKARESTLDELIQLMV 159
>UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3Ae -
Archaeoglobus fulgidus
Length = 211
Score = 62.9 bits (146), Expect = 6e-09
Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 4/182 (2%)
Frame = +3
Query: 84 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 263
+ D +T K W+ + AP F ++G T + +K+ GR E +LA+L D
Sbjct: 10 VKDKWTLKKWFTLIAPEYFGMAELGETPAD--DASKVV-----GRTVETTLAELTNDYSN 62
Query: 264 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 443
+ +++K V G N F +LT + L + ++ + IE +DV T DGY LRV
Sbjct: 63 QNTYKKLIFKVYRVAGDNAYTKFWRFELTREYLNSLTRRRTSKIEDIVDVTTADGYKLRV 122
Query: 444 FCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE----LREVVNKLIPDSI 611
+ FT + + KT +Q RAIR M +I+ ++ L+E V +P I
Sbjct: 123 KSVVFT----VRRCKT-----SQKRAIRAIMRQIVVEKASSLNFVQFLQECVLGKVPAEI 173
Query: 612 AK 617
K
Sbjct: 174 YK 175
>UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2;
Halorubrum|Rep: Ribosomal protein S3Ae - Halorubrum
lacusprofundi ATCC 49239
Length = 215
Score = 59.7 bits (138), Expect = 5e-08
Identities = 44/171 (25%), Positives = 78/171 (45%)
Frame = +3
Query: 102 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 281
+K WY V AP F ++++G TL + + GR +L +L D+ A +
Sbjct: 12 QKRWYSVLAPEQFDRQELGETLAEEP-------DQVVGRTITTTLGELTGDSGANNTKLT 64
Query: 282 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 461
F++ V F +LT D LR +V++ + +EA+I V TTD Y +RV + T
Sbjct: 65 FKITD--VGSDTAYTEFIKYELTRDYLRSLVRRGASKVEASITVLTTDDYRIRVQPVALT 122
Query: 462 NKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIA 614
K A +Q +AIR+ M + + + V+ ++ +++
Sbjct: 123 TKK---------ADRSQEKAIRRVMIDKVHAAAEDRTFESFVDAIVEGNLS 164
>UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_72, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 168
Score = 59.3 bits (137), Expect = 7e-08
Identities = 35/98 (35%), Positives = 56/98 (57%)
Frame = -1
Query: 311 SLHIFGD*SEFAERPFRVSVSL*ISQGNFENSSLQSFRSNFRSLGTVDKRGADLPLAEHR 132
SLH+ G S+ + + L ISQGN ++S L+ FR + S + +K A++ AE R
Sbjct: 61 SLHVLGSQSDLPVG--MILIVLNISQGNLKHSVLEPFRGDLGSQSSANKGFANISDAEDR 118
Query: 131 RSLDIVPIFASEWVDNLLLNTFFTALRQAFIFPDRHVQ 18
R L+++P+ S+ V LLL++ F L +FPD H +
Sbjct: 119 RRLNVIPVLLSKRVGCLLLSSLF-PLGNPLVFPDDHCE 155
>UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6;
Methanococcales|Rep: 30S ribosomal protein S3Ae -
Methanococcus maripaludis
Length = 225
Score = 58.0 bits (134), Expect = 2e-07
Identities = 39/134 (29%), Positives = 62/134 (46%)
Frame = +3
Query: 90 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 269
D + K WYD+ P F +G T N L GR+ E+SL DL +
Sbjct: 17 DTWKSKVWYDIYTPQSFGGDVIGQTPANDPAN-------LIGRISEISLRDLTNEHSKHM 69
Query: 270 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 449
+ F++ + V G N F G D T + L+ V++ ++ I A ++V+T DG+ +RV
Sbjct: 70 TRMYFKV--DGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVEVRTKDGFKVRVKA 127
Query: 450 IGFTNKDSLSQRKT 491
+ T + KT
Sbjct: 128 LVLTAVRARDHHKT 141
>UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4;
Halobacteriaceae|Rep: 30S ribosomal protein S3Ae -
Haloarcula marismortui (Halobacterium marismortui)
Length = 213
Score = 55.6 bits (128), Expect = 9e-07
Identities = 40/166 (24%), Positives = 75/166 (45%)
Frame = +3
Query: 102 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 281
+K WY V+AP F + +G T + + GR E +L +L D +
Sbjct: 12 QKRWYTVQAPEQFDREVLGKTPAEEP-------DKVLGRTIETTLGELTNDASENNTKLT 64
Query: 282 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 461
F++ V + F +LT D LR +V++ + +EA I V TTD Y +++ + T
Sbjct: 65 FKI--NEVASDSAYTEFIRHELTRDYLRSLVRRGSSKVEAYITVLTTDDYRVQIQPVAVT 122
Query: 462 NKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLI 599
K A +Q +AIR+ M +++ + ++++ ++
Sbjct: 123 TKK---------ADASQEKAIRRTMIDLVRETAEDHTFEQLIDSVV 159
>UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1;
Metallosphaera sedula DSM 5348|Rep: Ribosomal protein
S3Ae - Metallosphaera sedula DSM 5348
Length = 216
Score = 54.4 bits (125), Expect = 2e-06
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 1/176 (0%)
Frame = +3
Query: 90 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 269
D + K W+ + +P +F + +G+T T GR E +L DL D
Sbjct: 16 DKWKMKKWFSIYSPKVFGEVSLGSTPAFDVSQTM-------GRKVETTLYDLTGDFSTVY 68
Query: 270 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 449
F+++ +G + F G +L+ D +R +V++ + I +D+ T DG+ LRV
Sbjct: 69 VHLYFKVVRN--EGERLFTEFAGHELSRDYVRSLVRRKSSKINKVVDITTKDGFTLRVKT 126
Query: 450 IGFTNKDSLSQRKTCYAQH-TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIA 614
+ T Y H Q IRK M +++ + E V ++I ++A
Sbjct: 127 LAL----------TAYRVHREQATTIRKIMEDVVKKTAEGKTFDEFVQEMIFGNLA 172
>UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S3Ae - Methanocorpusculum labreanum (strain ATCC 43576 /
DSM 4855 / Z)
Length = 206
Score = 52.8 bits (121), Expect = 6e-06
Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 1/178 (0%)
Frame = +3
Query: 87 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 266
V+ + K+WY V AP K+ +G + + E + GRV VSL +L D +
Sbjct: 12 VEGWKAKNWYKVHAPEFLGKQFIGEIISSNP-------ENVPGRVLTVSLGELIQDYSKQ 64
Query: 267 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDG-YVLRV 443
F+++ V G F+G ++T + +R MVKK + +++ I V L+V
Sbjct: 65 NVRASFKIMN--VAGDAAYTQFNGHEMTKEFVRAMVKKRASRVDSTITVTPLGSTRELQV 122
Query: 444 FCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 617
FT +A+ +QV+ +R KM +++ ++ V+ ++ ++K
Sbjct: 123 TITAFTIN---------HARLSQVQELRAKMVKVVEDSAKEADFESFVSAMLKGELSK 171
>UniRef50_A5UKY8 Cluster: Small subunit ribosomal protein S3Ae; n=2;
Methanobacteriaceae|Rep: Small subunit ribosomal protein
S3Ae - Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861)
Length = 193
Score = 51.6 bits (118), Expect = 1e-05
Identities = 35/133 (26%), Positives = 62/133 (46%)
Frame = +3
Query: 90 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 269
D + K WY +K P F +++G T + L GR EV++ +L D +
Sbjct: 12 DTWKEKSWYTIKTPVNFEDKEIGETPARDP-------DYLIGRGVEVTMRELSGDFS--K 62
Query: 270 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 449
+ K R + V G F G TTD +R M+++ + I+A+ VKT D +++
Sbjct: 63 QYIKLRFEIDNVAGDVANTKFTGHKTTTDYVRSMIRRGTSRIDASSVVKTKDDRKVKLHV 122
Query: 450 IGFTNKDSLSQRK 488
+ T + + S ++
Sbjct: 123 LAVTTRRAKSSQQ 135
>UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured
marine bacterium HF10_29C11|Rep: Ribosomal protein S3AE
- uncultured marine bacterium HF10_29C11
Length = 322
Score = 50.8 bits (116), Expect = 3e-05
Identities = 34/127 (26%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Frame = +3
Query: 90 DPFTRKDWYDVKAPSM-FSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 266
D + K WY ++AP ++ + +G T+ + E + GR++E++ + D
Sbjct: 21 DKWKTKRWYTIRAPRHPWNYQNIGETIGE-------SDEHIIGRIYEMTQQEFNGDFTKM 73
Query: 267 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 446
+FR ++E V G++ L F G T+ +R +++++ I+ IDV T DGY++R+
Sbjct: 74 HVMLRFR-VSETV-GQDALTTFVGHHHQTNHIRRQIRRYRGKIDDVIDVVTEDGYLVRIK 131
Query: 447 CIGFTNK 467
+ T K
Sbjct: 132 PLIITQK 138
>UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3a - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 215
Score = 49.6 bits (113), Expect = 6e-05
Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Frame = +3
Query: 105 KDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKF 284
K+W V AP +F + +G + N+ + + R EVSL++L D S+ K
Sbjct: 25 KEWKIVIAPKIFEYKIIGYIINNKYTNNSGRLKEISKRNLEVSLSELINDYS---SYYKI 81
Query: 285 RLIAEYVQGRNVL-CNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 461
+ Y + + F+G L+ D + MV K L+E +I + T V+ +F + +T
Sbjct: 82 IKLQPYTMNKMFIRTTFNGFRLSYDFIFSMVLKPTKLVEFSIKINTLKKKVVEIFVL-YT 140
Query: 462 NKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSEL 575
+L Y + +++R I ++ I + + N +
Sbjct: 141 ITKNLHSNSITYGKRSRIRKINRESILCIKKMLENKPI 178
>UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2;
Thermoprotei|Rep: Ribosomal protein S3AE - Cenarchaeum
symbiosum
Length = 203
Score = 46.0 bits (104), Expect = 7e-04
Identities = 34/135 (25%), Positives = 63/135 (46%)
Frame = +3
Query: 84 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 263
+ D + K W + AP F+ V V T + KGRV EV+L D+
Sbjct: 8 VKDKWRDKRWITIHAPDSFNS--VPAARVPITD-----DKHAKGRVIEVTLFDILKGDPQ 60
Query: 264 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 443
+ +++ + I + V + F + + + LR +V++ + + +DVKT+DGYV R+
Sbjct: 61 QNNYKIYFQI-DKVSEESATSIFKRYEYSKEYLRSLVRRGSSKVNYIVDVKTSDGYVFRL 119
Query: 444 FCIGFTNKDSLSQRK 488
+ T + + +K
Sbjct: 120 KVLALTYRHLNTSKK 134
>UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S
ribosomal protein S3a; v-fos transformation effector
protein 1; n=2; Eutheria|Rep: Similar to ribosomal
protein S3a; 40S ribosomal protein S3a; v-fos
transformation effector protein 1 - Homo sapiens (Human)
Length = 119
Score = 41.5 bits (93), Expect = 0.016
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +3
Query: 84 IVDPFTRKDWYDVKAPSMFSKRQVGTT 164
++D F++KDWYDVKA +MF+ R +G T
Sbjct: 21 VIDQFSKKDWYDVKALAMFNIRNIGKT 47
>UniRef50_Q6KYU3 Cluster: 30S ribosomal protein S3Ae; n=2;
Thermoplasmatales|Rep: 30S ribosomal protein S3Ae -
Picrophilus torridus
Length = 209
Score = 39.5 bits (88), Expect = 0.063
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Frame = +3
Query: 90 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLK-GRVFEVSLADLQADTDAE 266
D + K WY + APS +R++ + A L GR EV ++D +
Sbjct: 11 DKWKEKTWYTIVAPSFLGEREIAL--------SPAADPSLMIGRKVEVPVSDFTGNFRKS 62
Query: 267 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 437
+ FR+ + G+ F G ++ D +R MV++ + I+ + KT DGY L
Sbjct: 63 STMVIFRV--KECTGKRCTTEFIGHKVSDDTIRRMVRRRKERIDIIMPSKTKDGYRL 117
>UniRef50_Q978Z2 Cluster: 30S ribosomal protein S3Ae; n=2;
Thermoplasma|Rep: 30S ribosomal protein S3Ae -
Thermoplasma volcanium
Length = 215
Score = 37.9 bits (84), Expect = 0.19
Identities = 41/174 (23%), Positives = 70/174 (40%)
Frame = +3
Query: 90 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 269
+ + K WY V+AP ++V L S + RV EV +++L +
Sbjct: 12 EKWKEKVWYTVEAPPYLGSKEVSVALGED-------SNSMVNRVVEVPISELTGNFKKSN 64
Query: 270 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 449
FR+ +G F G + D +R +V++ + I+ DVKT+D ++ V
Sbjct: 65 EKALFRITN--CEGTKCKTIFIGHYIGDDYIRRLVRRRKERIDIIEDVKTSDNSIITVKI 122
Query: 450 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSI 611
+ T+ + +K IRK + + I + E V LI D I
Sbjct: 123 VVVTDGKVTNTKKF---------QIRKVLTDFILNKGLSLPYSEFVRYLIGDDI 167
>UniRef50_Q4SVA9 Cluster: Chromosome undetermined SCAF13769, whole
genome shotgun sequence; n=3; Tetraodontidae|Rep:
Chromosome undetermined SCAF13769, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 556
Score = 33.9 bits (74), Expect = 3.1
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = -2
Query: 409 SMLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSAC 245
S+L S+ +C L++ +SLS+ S+ + +LRPC ++ ++L LS VS C
Sbjct: 389 SVLVSLSLCLSLSVLVSLSLSSSLSLSVPVSLRPCLSLSVLVSL--SLSVPVSLC 441
>UniRef50_Q74N14 Cluster: 30S ribosomal protein S3Ae; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3Ae -
Nanoarchaeum equitans
Length = 198
Score = 33.9 bits (74), Expect = 3.1
Identities = 37/171 (21%), Positives = 77/171 (45%), Gaps = 1/171 (0%)
Frame = +3
Query: 102 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 281
RK W+ +KAP++F++ ++G T + E + GR E+++A + + +
Sbjct: 12 RKIWFTIKAPAIFNEVELGETPAYK-------PEQVIGRRVELNMALVTNNYQLQNYKGI 64
Query: 282 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 461
F++ V+G G+ + ++ V+ + I + +K D ++RV + T
Sbjct: 65 FKITK--VEGTTAKTELEGIKMYESIIQKWVEPGRDKITDSFVIKDKDNRLVRVKPVLIT 122
Query: 462 NKDSLSQRKTCYAQHTQVRAI-RKKMCEIITRDVTNSELREVVNKLIPDSI 611
N R+ Q T +R I R E+ + + +++NK IP+ +
Sbjct: 123 N------RRLHRKQGTAIRNIWRNYFVELGKKLSFEDMVMKILNKEIPEQL 167
>UniRef50_Q119K9 Cluster: Putative uncharacterized protein precursor;
n=1; Trichodesmium erythraeum IMS101|Rep: Putative
uncharacterized protein precursor - Trichodesmium
erythraeum (strain IMS101)
Length = 2322
Score = 33.1 bits (72), Expect = 5.5
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -1
Query: 560 DVACNDFTHFLSDCSDLSVLGVARLALAQGVLIGET 453
+V NDF LSD ++S LG+A +A G+LI T
Sbjct: 2048 EVGLNDFQLMLSDRLEMSFLGIANFQVAGGLLINGT 2083
>UniRef50_A0YI31 Cluster: DNA mismatch repair protein; n=5;
Cyanobacteria|Rep: DNA mismatch repair protein - Lyngbya
sp. PCC 8106
Length = 563
Score = 33.1 bits (72), Expect = 5.5
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -2
Query: 358 LSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSAS--VSACRSARETSKTLPFNPSEAIFV 185
L VR++P ++ + C + I L+L KDL A+ +ACRSA L + +
Sbjct: 463 LWAVRTVP-EMLAQREDCHDALIELSLGKDLQAAQVATACRSAIRNGTPLSLTEMQTLLE 521
Query: 184 PWVR 173
WVR
Sbjct: 522 QWVR 525
>UniRef50_Q4P2U9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 3702
Score = 33.1 bits (72), Expect = 5.5
Identities = 26/104 (25%), Positives = 51/104 (49%)
Frame = +3
Query: 306 QGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQR 485
Q ++ CN G+D+ D+++ V + +ID D VF G D+L R
Sbjct: 517 QAFDLFCNARGLDVLVDRIKAEVNR-------DIDDGAADRMSDSVF--GEPGPDNLYGR 567
Query: 486 KTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 617
+ + + + +R++ K + +++ T LR +VN +PDS+ +
Sbjct: 568 LS-FGRASLLRSMFKTITQMMASTGTGDGLRNLVNTSLPDSLKR 610
>UniRef50_Q0KDB8 Cluster: L-Amino-acid oxidase; n=3; cellular
organisms|Rep: L-Amino-acid oxidase - Ralstonia eutropha
(strain ATCC 17699 / H16 / DSM 428 / Stanier
337)(Cupriavidus necator (strain ATCC 17699 / H16 / DSM
428 / Stanier337))
Length = 434
Score = 32.7 bits (71), Expect = 7.2
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 340 WTSQPISSGGWL--KNGRLSSKPTLM*RQPMDTFYVSSALVSPI 465
W + P S GGW+ + G L+ LM RQP + + A ++PI
Sbjct: 363 WANDPFSKGGWMHHRPGNLTQAAPLM-RQPHGRIHFAGADIAPI 405
>UniRef50_Q01HQ6 Cluster: OSIGBa0153E02-OSIGBa0093I20.19 protein;
n=42; Oryza sativa|Rep: OSIGBa0153E02-OSIGBa0093I20.19
protein - Oryza sativa (Rice)
Length = 1752
Score = 32.3 bits (70), Expect = 9.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 295 PNMCK-DVMCSATSTAWTSQPISSGGWLKNGRL--SSKPTLM*RQPMDTFYVSSALVSPI 465
P CK + WTS P+++ GW NGR+ + PTL Q + ++ A VS +
Sbjct: 1631 PGKCKLHAWLIIQNRVWTSDPLATRGWQNNGRVPPARTPTLGVAQSVKDWWEMLASVSGV 1690
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,710,175
Number of Sequences: 1657284
Number of extensions: 12535522
Number of successful extensions: 34369
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 33283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34338
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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