Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6g01
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.02 |bob1|gim5, gim5|prefoldin subunit 5 |Schizosaccharom... 69 7e-13
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 31 0.13
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 28 1.2
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom... 28 1.6
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo... 27 2.8
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 26 4.9
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.5
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo... 26 6.5
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 25 8.6
>SPBC215.02 |bob1|gim5, gim5|prefoldin subunit 5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 154
Score = 68.9 bits (161), Expect = 7e-13
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Frame = +1
Query: 238 LQMAKNKFGES-GDVLEKMTPDIKGKPMLVPLTSSMYVPGTI-ADVENVIIDIGTGYYAK 411
L A+ KF E +V + + + GK +LVPLTSS+YVPG + +++DIGTGYY +
Sbjct: 39 LGRAQLKFRECLANVNDAVRAENDGKEVLVPLTSSLYVPGKLNLGNSKLLVDIGTGYYVE 98
Query: 412 KDIESGKDYFKRRVEFVTEQMEKISMLGAEKSKLREAVNALVEMKVQNELQAKKAN 579
K +Y+KR+ E++ +E ++ KS AV +++ K A K++
Sbjct: 99 KSAGEATEYYKRKCEYLASSIENLNNAIDAKSVQIRAVQNIMQQKATATTAATKSS 154
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 31.5 bits (68), Expect = 0.13
Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Frame = +1
Query: 238 LQMAKNKFGESGDVLEKMTPDIKGKPMLVPLTSSMYVPGTIADVENVIIDIGTGYYA-KK 414
L MA +K+ ES K+ + + + ++ + +++ +I +G Y+ KK
Sbjct: 233 LNMADSKYNES-----KVANNSQNNQIKTLKAQNLNIHKNFQKIQSELIQTNSGLYSTKK 287
Query: 415 DIESGKDYFKRRVEFVTEQMEKISMLGAEKSKLREAVNALVEMKVQN-ELQAKKANSS*H 591
++ + + + + T+Q +KI L S+ E N + + ++N EL+ + H
Sbjct: 288 ELSALQVRYATLLRKFTDQTKKIEELSLAASRSSENENTIRRLALENHELKNSNNQLNNH 347
Query: 592 I*DL 603
I DL
Sbjct: 348 IDDL 351
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 268 SGDVLEKMTP-DIKGKPMLVPLTSSMYVPGTIADVENVIIDIGTGYYAKKDIESGKDYFK 444
+ +V+EK P + P+ LTS VP D+EN + G+ + K ++ + F+
Sbjct: 416 NNNVVEKAEPAPVSEIPLSKTLTSHKIVPKHQVDLENYVFTEGSRLMSNKAVKLPEGSFR 475
Query: 445 R 447
R
Sbjct: 476 R 476
>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 287 FSKTSPDSPNLFLAICNVCIES*NTVNSWSNCCFN*AS*GKGSLFKSI 144
+ K +PD LF + N C++ N S +N + K +FKSI
Sbjct: 253 YKKPTPDPDLLFSHLSNTCLQGDNVEQSSIRDFWNTSIENKDDIFKSI 300
>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 385
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 441 EVIFATFNVFLSVISSANVNNDILNISYCARNI 343
EVI ++ V+S ANV N++ +C I
Sbjct: 158 EVISEKLGIYCGVLSGANVANEVAREQFCETTI 190
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 453 YSSLEVIFATFNVFLSVISSANVNNDILNI 364
YSS + + A FLSV+S +D++N+
Sbjct: 129 YSSPDGVLAKTASFLSVLSDGGYEDDVMNV 158
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = -3
Query: 441 EVIFATF---NVFLSVISS--ANVNNDILNISYCARNIH*TSQWNKH 316
EVIFA + N F + ++ A +N+ I++ + C R H T Q KH
Sbjct: 23 EVIFANYKHTNDFFKITATTYALINSVIVSNNCCNRRFHSTWQKKKH 69
>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 37 DPTNNQIE*LETCVKFI 87
DPTN +IE L+T +KF+
Sbjct: 245 DPTNVEIENLKTAIKFL 261
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 579 LFITYLRLNLKNILWRDSCPFNV*S*PKFS 668
++ YLRLN + +LW + P + P +S
Sbjct: 244 IYALYLRLNPRILLWDNDAPEKIGDSPDYS 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,334
Number of Sequences: 5004
Number of extensions: 50419
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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