Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6g01
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0443 + 17959966-17960185,17960251-17960354,17960682-17960762     57   2e-08
01_07_0047 + 40731508-40731714,40731834-40731893,40731992-407321...    34   0.10 
08_01_1083 + 11096520-11096664,11097543-11097592,11097682-110977...    30   2.2  
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277...    29   3.9  
06_03_0084 - 16386962-16387033,16387124-16387175,16387252-163873...    28   9.0  

>10_08_0443 + 17959966-17960185,17960251-17960354,17960682-17960762
          Length = 134

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 23/48 (47%), Positives = 34/48 (70%)
 Frame = +1

Query: 286 KMTPDIKGKPMLVPLTSSMYVPGTIADVENVIIDIGTGYYAKKDIESG 429
           ++ P    K MLVPLT+S+YVPGT+ D E V++D+GTGY+ +   + G
Sbjct: 67  RLPPSALRKKMLVPLTASLYVPGTLDDSEKVLVDVGTGYFIEGQRQGG 114


>01_07_0047 +
           40731508-40731714,40731834-40731893,40731992-40732159,
           40732198-40732203,40732898-40732961,40733395-40733690,
           40733799-40733903,40734030-40734066,40734309-40734403,
           40735226-40735282,40735361-40735438,40735527-40735586
          Length = 410

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
 Frame = +1

Query: 280 LEKMTPDIKGKPMLVPLTSSMYVPGTIADVENVIIDIGTGYYAKKDIESGKDYFKRR--- 450
           L +  PD     ++VP   + + PG +     +++ +G GYY ++  +   +   RR   
Sbjct: 56  LVQRLPDEVSHDIMVPFGGAAFFPGRLIHTNELLVLLGEGYYVERSAKQTTEILHRRGME 115

Query: 451 VEFVTEQME-KISMLGAE----KSKLRE--AVNALVEMKVQNELQAKKANSS 585
           +E   E M+  IS L AE    +S   E  AV  L+E++ + + +  + NSS
Sbjct: 116 LEAQVEAMKATISDLEAEAKFFESTAAEASAVEGLIEIREEYD-EDTEINSS 166


>08_01_1083 +
           11096520-11096664,11097543-11097592,11097682-11097754,
           11099122-11099201,11099354-11099505,11100653-11100812,
           11100886-11100933,11101118-11101198,11101517-11101597
          Length = 289

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +1

Query: 385 DIGTGYYAKKDIESGKDYFKRRVEFVTEQMEKISMLGAEKSKLREAVNALVEMKVQNEL 561
           DIG  Y+ ++D+E   DY ++  +    + +  S   + K K+ E    L + +  NE+
Sbjct: 117 DIGEIYHQEQDLEKASDYLEKSADLFDSEGQS-SQSNSIKQKVAEIAAQLEQYQKANEI 174


>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
            31227790-31228014,31228097-31228255,31228393-31228551,
            31228855-31229013,31229371-31229490,31229604-31229825
          Length = 1871

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
 Frame = +1

Query: 442  KRRVEFVTEQMEKISMLGAEKSKLREAVNALVEMK-----VQNELQAKKANSS 585
            K+  + VTE+ EK++++  E SKL + ++   EM+     ++ +LQAK +  S
Sbjct: 1753 KQYEQKVTEEREKLALVNTEVSKLTQKLSKSAEMEKKIEHLEQKLQAKDSVES 1805


>06_03_0084 -
           16386962-16387033,16387124-16387175,16387252-16387313,
           16387509-16387543,16387637-16387679,16388610-16388692,
           16388829-16388917,16390415-16390681,16391370-16391446,
           16391546-16391677,16391802-16391870,16392464-16392529,
           16392603-16392773,16392848-16392916,16393005-16393086,
           16393175-16393219,16393535-16393659,16394271-16394525,
           16396561-16396722
          Length = 651

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
 Frame = +1

Query: 220 HDSIQTLQMAKNKFGESGDVLEKMTPDIKGKPMLVPLTSSMYVPGTIADVENVIIDIGTG 399
           H  ++  + ++ K  +     +  +  I  K ++  L SS+      AD         +G
Sbjct: 534 HLPVEPEEQSEGKVIQRRGRFQVTSDSIAQKEVISRLISSIEEISDAADASTTGSSQPSG 593

Query: 400 -YYAKKDIESGKDYFKRRVEFVTEQMEKISMLGAEKSKLREAVNAL 534
            ++ +K+++S   Y     + VTE  E++  L  + ++L E +NAL
Sbjct: 594 VHFREKELQS---YIANLQQSVTELAEEVQRLKLKNTQLEEQINAL 636


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,121,068
Number of Sequences: 37544
Number of extensions: 261195
Number of successful extensions: 541
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)