Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6g01
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-1|AAK29855.1|  152|Caenorhabditis elegans Hypothetical pr...    67   1e-11
AF303258-1|AAG50216.1|  152|Caenorhabditis elegans 3H288 protein.      67   1e-11
Z49130-1|CAA88965.2|  708|Caenorhabditis elegans Hypothetical pr...    33   0.21 
AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical...    29   2.6  
AF099917-3|AAC68781.1|  310|Caenorhabditis elegans Hypothetical ...    28   8.0  

>U00036-1|AAK29855.1|  152|Caenorhabditis elegans Hypothetical
           protein R151.9 protein.
          Length = 152

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 33/115 (28%), Positives = 62/115 (53%)
 Frame = +1

Query: 217 FHDSIQTLQMAKNKFGESGDVLEKMTPDIKGKPMLVPLTSSMYVPGTIADVENVIIDIGT 396
           F +S   L+    +  +S   L+ +     G   L+PL+ S+Y+   ++D    +++IGT
Sbjct: 32  FQESFNALKGLLTRNEKSISALDDVKIATAGHTALIPLSESLYIRAELSDPSKHLVEIGT 91

Query: 397 GYYAKKDIESGKDYFKRRVEFVTEQMEKISMLGAEKSKLREAVNALVEMKVQNEL 561
           GY+ + D E  K  F R+ E +T+Q+E +  +  EK + R  ++   + KVQ++L
Sbjct: 92  GYFVELDREKAKAIFDRKKEHITKQVETVEGILKEKRRTRAYISDAFQTKVQSQL 146


>AF303258-1|AAG50216.1|  152|Caenorhabditis elegans 3H288 protein.
          Length = 152

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 33/115 (28%), Positives = 62/115 (53%)
 Frame = +1

Query: 217 FHDSIQTLQMAKNKFGESGDVLEKMTPDIKGKPMLVPLTSSMYVPGTIADVENVIIDIGT 396
           F +S   L+    +  +S   L+ +     G   L+PL+ S+Y+   ++D    +++IGT
Sbjct: 32  FQESFNALKGLLTRNEKSISALDDVKIATAGHTALIPLSESLYIRAELSDPSKHLVEIGT 91

Query: 397 GYYAKKDIESGKDYFKRRVEFVTEQMEKISMLGAEKSKLREAVNALVEMKVQNEL 561
           GY+ + D E  K  F R+ E +T+Q+E +  +  EK + R  ++   + KVQ++L
Sbjct: 92  GYFVELDREKAKAIFDRKKEHITKQVETVEGILKEKRRTRAYISDAFQTKVQSQL 146


>Z49130-1|CAA88965.2|  708|Caenorhabditis elegans Hypothetical
           protein T06D8.2 protein.
          Length = 708

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
 Frame = +1

Query: 265 ESGDVLEKMTPDIKGKPMLVPLTSSMYVPGTIADVENVIIDIGTGYYAKKDIESGKDYFK 444
           ES D ++K T DI  + +L     SM  P    +V + I   G    AK  I S   +F+
Sbjct: 428 ESQDFVDKSTDDITEEQVL-----SMVPPDQRGNVRSAISLFGLEPIAK--IYS--KHFE 478

Query: 445 RRVEFVTEQMEKISMLGAEK-SKLREAVNALV 537
            R E + E  EKI  L AEK SK  E+++ L+
Sbjct: 479 NRKEGIEEIREKIDSLSAEKTSKYFESISCLL 510


>AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical
           protein Y71A12B.17 protein.
          Length = 913

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -2

Query: 220 EILSIPGLTA--VSIELVEAKVVCLNRFVECLNRMPSL 113
           ++  + GL A  VS ++ +A +  + +FVEC N +PSL
Sbjct: 410 DLFKLKGLVALDVSRDIAKANIKTIRQFVECGNVLPSL 447


>AF099917-3|AAC68781.1|  310|Caenorhabditis elegans Hypothetical
           protein F54D10.3 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +3

Query: 81  VHLLFPFINIYKDGIRFRHSTNRFKQTTFASTSSIETAVRPGI 209
           V L  PF+N +++ +  RH  ++  Q + +S+SSI + + P +
Sbjct: 183 VKLENPFLNAFENPMNLRHELSQMLQAS-SSSSSIPSPISPPV 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,478,619
Number of Sequences: 27780
Number of extensions: 280948
Number of successful extensions: 757
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)