Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6f23
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 30 0.31
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 29 0.41
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 29 0.54
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 28 1.2
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 1.6
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 27 2.2
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 27 2.9
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 27 2.9
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 26 3.8
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 26 3.8
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c... 26 5.0
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 25 8.8
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 8.8
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 25 8.8
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 25 8.8
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 29.9 bits (64), Expect = 0.31
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -1
Query: 611 LSTYQESVHDDRNEIFDFLNQKLQPVDRIVH-DRVRANDENPNEFILSGDKDDV 453
+ST+ E + D+ ++ D LN P +VH DR+R+ D NP E +S D D V
Sbjct: 159 ISTH-EPHYADKLQMSDILNDDSNP-KLVVHLDRIRSQDNNP-EAKVSHDSDRV 209
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 29.5 bits (63), Expect = 0.41
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = -1
Query: 599 QESVHDDRNEIF-DFLNQKLQPVDRIVHDRVRANDENPNEFILSGDKDDVTMKCPAYFNF 423
Q+ +++ +IF L+ L+ VD + + + N +FILSG + D T CP++
Sbjct: 238 QKKENENEMQIFLKGLSLLLKHVDHLYFRGLTGKNFNVADFILSGLQSDHTNLCPSFLVC 297
Query: 422 DYAQLKC 402
++ L C
Sbjct: 298 LHSLLYC 304
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 29.1 bits (62), Expect = 0.54
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -1
Query: 227 ECPDNYTFDAKTRQCKVNEL-CENRPDGYILSYFPSNLLVNQFMQCVSGR-HVVRECP 60
+CPD + + T C + C+N GYI SY PSN + + C G + +CP
Sbjct: 66 DCPDG-SDEPGTSACHNGKFFCKNT--GYISSYIPSNRVDDTVCDCCDGSDESLIKCP 120
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 1 WVHGCASTHDIKLRSNILF-AGHSRTTWR 84
WV C ST+D L NIL G S WR
Sbjct: 660 WVASCDSTNDTNLGPNILTQVGESLKKWR 688
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 462 LVAAQNKLVGIFIICSNAIVYDSINRLE-FLI*EIKNFI 575
L + Q+ V IC ++ DSINRL L+ E+ NFI
Sbjct: 502 LDSVQSFPVSFHSICKGRLIRDSINRLNGSLLGELDNFI 540
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +3
Query: 162 FTQFVNFTLAGFCVKRVIVWTFFDCVRSVCKTPKI 266
F F A FC K V+VWT CV S P I
Sbjct: 120 FQNSQQFRDANFC-KLVLVWTVCQCVSSTVYYPAI 153
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -1
Query: 509 RANDENPNE--FILSGDKDDVTMKCPAYFNFDYAQLKCVPVPPCDNKPAGRY 360
R E P+ + LS + + + P Y+N++Y Q P P N G Y
Sbjct: 427 RFTQEPPSSSLYSLSESSINYSTQSPMYYNYNYPQPSFPPFHPIYNDSIGYY 478
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1
Query: 518 DRVRANDENPNEFILSGDKDDVTMKCPAYFNFDYAQLKCV 399
D +RA +P + L DD+T+KC FN+D + KCV
Sbjct: 99 DYIRALVVHPTQPFLLTSSDDMTIKC---FNWDMS-WKCV 134
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/71 (22%), Positives = 39/71 (54%)
Frame = -1
Query: 611 LSTYQESVHDDRNEIFDFLNQKLQPVDRIVHDRVRANDENPNEFILSGDKDDVTMKCPAY 432
+S+Y ++ D ++++D N+K + + I+ R + ++P F + D ++V + P +
Sbjct: 18 ISSYNDANGLDIDDLWDIYNEKTRRMIHIISQRYKPKKQSP--FPVIAD-ENVRIFPPLH 74
Query: 431 FNFDYAQLKCV 399
D+A+ + V
Sbjct: 75 KTIDWAKKRNV 85
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = -1
Query: 611 LSTYQESVHDDRNEIFDFLNQKLQPVDRIV 522
L++YQ+S+ D+ N FLN+ + ++++
Sbjct: 385 LTSYQKSIQDEENSSVSFLNRWYRHFNQLI 414
>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -1
Query: 359 PMDERLLDTLVLNQHLDKDYSSNEHLYHPTFYLRCFANGAHAVEECPDNY 210
P ERL L+ N K ++ E+ + N A ++ ECP NY
Sbjct: 158 PAPERLTFQLLSNTSEKKTATAEENAFKVGLIEAAAQNLARSLMECPANY 207
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 148 PSGLFSHNSLTLHWR 192
PSG++ +N L L+WR
Sbjct: 451 PSGIYRYNKLGLNWR 465
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 448 MVTSSLSPLKINSLGFSSFALTRSCTIRSTG 540
++TS+ +P+ ++S SSF + S + +TG
Sbjct: 249 IITSTSTPVTVSSSSLSSFTPSYSTNLTTTG 279
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 398 PVPPCDNKPAGRYPMDERLLDTLVLNQHLDKDYSSNE 288
P+P D K + P + RLLD+L+++ + K +E
Sbjct: 303 PLPLDDWKRIFKLPAEPRLLDSLLISSQIMKSTQIDE 339
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -1
Query: 95 CVSGRHVVRECPANKIFDRNLMSCVEAHP 9
C H+V E PA+K L CV P
Sbjct: 632 CTVENHIVTESPAHKSNKAQLFVCVPTTP 660
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,110
Number of Sequences: 5004
Number of extensions: 56241
Number of successful extensions: 157
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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