Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6f23
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0230 - 32518749-32519143,32519301-32519589 31 0.97
06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016 30 1.7
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264... 29 2.2
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 29 3.0
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 29 3.9
11_06_0070 + 19802893-19803026,19803054-19803816 28 6.8
07_03_0264 - 15958690-15958910,15959410-15959484,15959547-159597... 27 9.0
05_03_0200 + 9752625-9753182 27 9.0
05_01_0143 - 944169-947273 27 9.0
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 27 9.0
04_03_0685 + 18687520-18687787,18688637-18688725,18689102-186891... 27 9.0
>03_06_0230 - 32518749-32519143,32519301-32519589
Length = 227
Score = 30.7 bits (66), Expect = 0.97
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -1
Query: 446 KCPAYFNFDYAQLKCVPVPPCDNKPAGRYPMDERL---LDTLVLNQHLDKDYSSNEHLYH 276
+ P+Y DY+ + P PP G P D+ +T +++ DKD+ S+E ++
Sbjct: 72 RIPSYNLDDYSDYEPTPAPPSPLPSYGPEPADDETDKDFETDLVDSVTDKDFESDEAIW- 130
Query: 275 PTFYLR 258
FY R
Sbjct: 131 -AFYER 135
>06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016
Length = 441
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 389 PCDNKPAG--RYPMDERLLDTLVLNQHLDKDYSSNEHLYHPTF 267
PC +KP +P + L +L+LN HLD + E HP F
Sbjct: 84 PCKSKPLLLLTWPGTDPSLPSLLLNSHLDSVPAEPEQWLHPPF 126
>02_05_0101 - 25824093-25824112,25824734-25824842,25824927-25826429,
25826596-25827333,25827712-25827919,25828455-25830409,
25830868-25830960,25831044-25831100,25831189-25831272,
25831345-25831437,25831622-25832053,25833593-25833933,
25834663-25835215
Length = 2061
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = -1
Query: 347 RLLDTLVLNQHLDKDYSSNEHLYHPTFYLRCFANGAHAVEECPDNYTFD 201
+LL + LNQ + DY+ + ++ P+ LR F++ + + E PD +TFD
Sbjct: 1692 KLLFSDSLNQ-IPGDYAEHAEVFSPS-KLRKFSDMDNTIPELPDVFTFD 1738
>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = -1
Query: 260 RCFANGAHAVEECPDNYTFDAKTRQCKVNELCENRPDGYILSYFPSNLLVNQFMQCVSGR 81
+C + G V C D FD + +VN+ EN+ D S L +C S R
Sbjct: 913 KCVSAGQERVVSCKD--PFDTVVKNIRVNQEIENKADELTCDRTTSVLSAVGLTECPSNR 970
Query: 80 HVV 72
+ +
Sbjct: 971 NYI 973
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/52 (44%), Positives = 27/52 (51%)
Frame = -1
Query: 356 MDERLLDTLVLNQHLDKDYSSNEHLYHPTFYLRCFANGAHAVEECPDNYTFD 201
M L DTL LNQ LD+D S+ L+ FA A A+EE D Y FD
Sbjct: 200 MKNLLCDTLELNQVLDRDVSALS-----GGELQRFAIAARAMEEA-DVYMFD 245
>11_06_0070 + 19802893-19803026,19803054-19803816
Length = 298
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +2
Query: 338 PANARPWDNDRRACCRTAAREHILIVRNQS*NMRGISWSRRPCRR 472
P R W RR R + E ++ + RG W RRP R
Sbjct: 108 PKTGRYWTPTRRPLRRASGEEEVMPGMRAASRSRGRWWRRRPALR 152
>07_03_0264 -
15958690-15958910,15959410-15959484,15959547-15959775,
15960312-15960587,15962109-15962369,15962632-15962781,
15963555-15963591,15963958-15964024,15964228-15964291,
15964643-15964812,15965046-15965124,15965576-15965733,
15965862-15966030,15966531-15966602,15966977-15967018,
15967245-15967488,15968782-15968963
Length = 831
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 1 WVHGCASTH-DIKLRSNILFAGHSRTTWRPLTHCIN 105
++H AS++ ++K+R++ F H R W L H +N
Sbjct: 399 FLHSFASSNFELKIRNDWRFKHHLRLPWVTLVHYVN 434
>05_03_0200 + 9752625-9753182
Length = 185
Score = 27.5 bits (58), Expect = 9.0
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Frame = +2
Query: 275 DDTSVRC*NNLCPSVGSTPTC---PANARPWDNDRRACCRTAAREHILIVRNQS*NMRGI 445
DDT+ SVG T P R W RR R + E ++ + RG
Sbjct: 32 DDTATST-EETATSVGVPATYRSRPKTGRYWMPTRRPLRRASGEEEVMPGMRAASRSRGR 90
Query: 446 SWSRRPCRR 472
W RRP R
Sbjct: 91 WWRRRPALR 99
>05_01_0143 - 944169-947273
Length = 1034
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 353 DERLLDTL-VLNQHLDKDYSSNEHLYHPT 270
DE++ L +LN LDKD S N H +PT
Sbjct: 698 DEKIRSLLELLNAVLDKDVSGNGHQMNPT 726
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = -1
Query: 542 QPVDRIVHDRVRANDENPNEFILSGDKDDVTMKCPAYFNFDYAQLKCVPVPPCDN 378
Q D I+ + + A+ EN E +++GD +++ A + + K + PP D+
Sbjct: 245 QVEDAIMEEELPADGENKGEQLINGDPKNISCSPIADSDQNVPSQKSLDAPPFDS 299
>04_03_0685 +
18687520-18687787,18688637-18688725,18689102-18689195,
18689237-18689304,18690300-18690383,18690458-18690745,
18691474-18691626
Length = 347
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 28 DIKLRSNILFAGHSRTTWRPLTHCIN-WLTSKLEGKYDSI*PSGLFSHNS 174
D KLR HS+ + + LTSKL G+Y ++ P GLF S
Sbjct: 151 DFKLRKANTLCRHSKQHCYIFSKFLTPLLTSKLAGQYVAVDPMGLFVSTS 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,256,012
Number of Sequences: 37544
Number of extensions: 365963
Number of successful extensions: 885
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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