Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6f23
(617 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 33 0.12
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 33 0.22
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 32 0.38
Z32840-2|CAD91625.1| 160|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical pr... 30 1.2
DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin p... 30 1.2
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 30 1.5
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 30 1.5
U58757-3|AAC47921.3| 620|Caenorhabditis elegans Hypothetical pr... 29 2.7
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 29 3.5
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 29 3.5
Z46676-2|CAA86662.1| 507|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z68337-8|CAA92749.2| 241|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical ... 28 6.1
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 33.5 bits (73), Expect = 0.12
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 18/93 (19%)
Frame = -1
Query: 248 NGAHAVEECPDNYTFDAKTRQCKVN---ELCENRPDGYILSYFPSNLLVN---------- 108
NG V CPD F K + C + C+ G++ +Y S L
Sbjct: 260 NGIPIVMFCPDGLMFSEKNQMCDYEWNVDECDLESSGFMENYKASEALTPCTNMDNGLYA 319
Query: 107 -----QFMQCVSGRHVVRECPANKIFDRNLMSC 24
+ + C +GR + ECP + +F+ N + C
Sbjct: 320 LDCTPRVLSCQNGRENIFECPPSLVFNENSLIC 352
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -1
Query: 167 CENRPDGYILSYFPSNLLVNQFMQCVSGRHVVRECPANKIFDRNLMSCVEAH 12
C N DG +P +F+ CVSG +CP + ++ +NL C H
Sbjct: 25 CTNVGDGM----YPLGACEPRFLACVSGEARYMDCPEDLVYHKNLEFCDWRH 72
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 110 NQFMQCVSGRHVVRECPANKIFDRNLMSC 24
N F C G R CPAN +F+ + SC
Sbjct: 192 NVFFSCSEGIAHRRNCPANLVFNPAISSC 220
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Frame = -1
Query: 266 YLRCFANGAHAVEECPDNYTFDAKTRQC----KVNELCEN--RPD--GYILSYFPSNLLV 111
+ C AH CP N F+ C V + E +P G + YF
Sbjct: 194 FFSCSEGIAHR-RNCPANLVFNPAISSCDWPKNVMDCSEKSEKPQNCGEVDGYFSFGRCS 252
Query: 110 NQFMQCVSGRHVVRECPANKIFDRNLMSC 24
+ F C +G +V CP +F C
Sbjct: 253 SSFSACTNGIPIVMFCPDGLMFSEKNQMC 281
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 32.7 bits (71), Expect = 0.22
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = -1
Query: 317 HLDKDYSSNEHLYHPTFYLRCFANGAHAVEECPDNYTFDAKTRQCKVNELCENRPDGYIL 138
+++ + S E LY RC ++ + D T + + + +N C R G
Sbjct: 64 NVEYEQSCPEGLYFDRLLARCERRSSNHLCATGDRVTLNVRQKAVSIN--CVGRLSG--- 118
Query: 137 SYFPSNLLVNQ-FMQCVSGRHVVRECPANKIFDRNLMSC 24
Y + N+ + QC +G +R+CP +++ L C
Sbjct: 119 DYALDKTVCNENYYQCANGISYMRKCPYQQVYVPILKRC 157
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 266 YLRCFANGAHAVEECPDNYTFDAKTRQCKVNELC 165
+L C NG V +C DN FD + C+ +C
Sbjct: 369 FLSC-DNGVGRVIQCADNLVFDTRVSACEFAAIC 401
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 110 NQFMQCVSGRHVVRECPANKIFDRNLMSC 24
++++QCV+ + CP FDR L C
Sbjct: 56 SKYLQCVNNVEYEQSCPEGLYFDRLLARC 84
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
H02I12.1 protein.
Length = 1319
Score = 31.9 bits (69), Expect = 0.38
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Frame = -1
Query: 263 LRCFANGAHAVEECPDNYTFDAKTRQCKVNEL---CEN--RPDGYIL---SYFPSNLLVN 108
L+CF C + F+ T +C + CEN + +G S+
Sbjct: 1200 LQCFGGELFEHPSCQSSLAFNQLTGKCDYPQKVSGCENHGQTNGECSEHGSFIADANNCE 1259
Query: 107 QFMQCVSGRHVVRECPANKIFDRNLMSC 24
F +CV GR VV CP+ +F+ L C
Sbjct: 1260 VFYRCVWGRKVVMTCPSGTVFNPLLSVC 1287
Score = 31.5 bits (68), Expect = 0.50
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 110 NQFMQCVSGRHVVRECPANKIFDRNLMSCVEA 15
NQF+ CV+G + +CP + +F+ C E+
Sbjct: 113 NQFISCVAGGAYMAKCPDSLVFNERTQDCRES 144
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 191 RQCKVNELCENRPDGYILSYFPSNLLVNQFMQCV-SGRHVVRECPANKIFDRNLMSCVE 18
RQ +VN+ C+ L++ +QF+ C +G + + CP + FD+ L SC E
Sbjct: 561 RQAQVNKDCQQYTTPTFLTFGDC---FDQFIFCSGNGINRMAACPIGETFDKTLRSCSE 616
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 266 YLRCFANGAHAVEECPDNYTFDAKTRQCKVNELC 165
++ C NG + + CP TFD R C +E C
Sbjct: 587 FIFCSGNGINRMAACPIGETFDKTLRSC--SETC 618
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -1
Query: 110 NQFMQCVSGRHVVRECPANKIFDRNLMSCV 21
++F +C + ++CP N +F+ +L+ CV
Sbjct: 320 SRFNRCQNNSVRSKQCPVNTLFESSLVMCV 349
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = -1
Query: 128 PSNLLVNQFMQCVSGRHVVRECPANKIFDRNLMSCVEAHPC 6
P V +++C +V + C K+FD + CV C
Sbjct: 1039 PVGFCVRTYLECTDAGNVEKLCRIGKLFDSHSNRCVPRIGC 1079
>Z32840-2|CAD91625.1| 160|Caenorhabditis elegans Hypothetical
protein C07G2.1b protein.
Length = 160
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 107 QFMQCVSGRHVVRECPANKIFDRNLMSC 24
QF+ C G + +CPA+ I+D +++C
Sbjct: 77 QFLTCSGGISRIMDCPADLIYDPRIVAC 104
>Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical
protein C07G2.1a protein.
Length = 584
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 107 QFMQCVSGRHVVRECPANKIFDRNLMSC 24
QF+ C G + +CPA+ I+D +++C
Sbjct: 77 QFLTCSGGISRIMDCPADLIYDPRIVAC 104
>DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin
proteoglycan-1 protein.
Length = 584
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 107 QFMQCVSGRHVVRECPANKIFDRNLMSC 24
QF+ C G + +CPA+ I+D +++C
Sbjct: 77 QFLTCSGGISRIMDCPADLIYDPRIVAC 104
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Frame = -1
Query: 272 TFYLRCFANGAHAVEECPDNYTFDAKTRQCK----VNE---LCENRPDGYILSYFPSNLL 114
T +L C + G + +CP + F+ C V E L +P YF
Sbjct: 262 TNFLTC-SGGIARIMDCPASLVFNPTILVCDWPRDVAECAGLPTPQPTCEEDGYFSFGQC 320
Query: 113 VNQFMQCVSGRHVVRECPANKIFDRNLMSC 24
+ F C +GR +V CPA F + + C
Sbjct: 321 SSSFTACTNGRAIVMFCPAGLKFSESTVRC 350
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 107 QFMQCVSGRHVVRECPANKIFDRNLMSCVEAH 12
QF+ C G + +CPA+ I++ L+ C H
Sbjct: 40 QFLTCSGGIARIMDCPADLIYNEPLLICDWRH 71
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Frame = -1
Query: 272 TFYLRCFANGAHAVEECPDNYTFDAKTRQCK----VNE---LCENRPDGYILSYFPSNLL 114
T +L C + G + +CP + F+ C V E L +P YF
Sbjct: 262 TNFLTC-SGGIARIMDCPASLVFNPTILVCDWPRDVAECAGLPTPQPTCEEDGYFSFGQC 320
Query: 113 VNQFMQCVSGRHVVRECPANKIFDRNLMSC 24
+ F C +GR +V CPA F + + C
Sbjct: 321 SSSFTACTNGRAIVMFCPAGLKFSESTVRC 350
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 107 QFMQCVSGRHVVRECPANKIFDRNLMSCVEAH 12
QF+ C G + +CPA+ I++ L+ C H
Sbjct: 40 QFLTCSGGIARIMDCPADLIYNEPLLICDWRH 71
>U58757-3|AAC47921.3| 620|Caenorhabditis elegans Hypothetical
protein C01B10.10 protein.
Length = 620
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -1
Query: 614 DLSTYQESVHDDRNEIFDFLNQKLQPVDRIVHDRVRANDENPNEFILSGDKDDVTMKC 441
DLS +Q + N+ FD L ++++ DR+V + N + K+ MKC
Sbjct: 224 DLSLFQRIIVMSANQYFDTLEEQIERSDRVVKHAGCSVPTNLARKMNRSQKEKYMMKC 281
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = -1
Query: 194 TRQCKVNELCENRPDGYILSYFPSNLLVNQFMQCVSGRHVVRECPANKIFDRNLMSCVEA 15
+ C C++ P GYI S + + V+ GR AN+ D++L SC E
Sbjct: 335 SHDCSHQAACQDTPTGYICSCNSNCIDVSSRYNLPPGRKC--SVAANQCSDKSLNSCDEN 392
Query: 14 HPC 6
C
Sbjct: 393 ADC 395
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = -1
Query: 194 TRQCKVNELCENRPDGYILSYFPSNLLVNQFMQCVSGRHVVRECPANKIFDRNLMSCVEA 15
+ C C++ P GYI S + + V+ GR AN+ D++L SC E
Sbjct: 335 SHDCSHQAACQDTPTGYICSCNSNCIDVSSRYNLPPGRKC--SVAANQCSDKSLNSCDEN 392
Query: 14 HPC 6
C
Sbjct: 393 ADC 395
>Z46676-2|CAA86662.1| 507|Caenorhabditis elegans Hypothetical
protein C08B11.2 protein.
Length = 507
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 266 YLRCFANGAHAVEECPDNYTFDAKTRQCKVNELCENRPDGYILSY 132
YL+ F + VEE N+ +A QC + LCE+R + LS+
Sbjct: 258 YLKLFESVISGVEE---NFNPEAIVLQCGSDSLCEDRLGQFALSF 299
>Z68337-8|CAA92749.2| 241|Caenorhabditis elegans Hypothetical
protein M7.12 protein.
Length = 241
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 602 YQESV-HDDRNEIFDFLNQKLQ 540
Y E+V HD+RNE+ DFLN +
Sbjct: 25 YFETVKHDNRNEVVDFLNNNFR 46
>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical
protein ZC84.1 protein.
Length = 1556
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = -1
Query: 230 EECPDNYTFDAKTRQCKVNELCENRPDGYILSYFPSNLLVNQ----FMQCVSGRHVVREC 63
E+C D + + K ++ C + +L P L+ + F++CV R V+REC
Sbjct: 14 EDCIDRPCVECR-HYIKQDDPCLHHGTKPMLFCDPQTNLIQESSTNFLECVQNRWVLREC 72
Query: 62 PANKIFDRNLMSCVE 18
I++ CV+
Sbjct: 73 VTGTIYESG-RGCVD 86
>AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical
protein W03F11.1 protein.
Length = 235
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -1
Query: 134 YFPSNLLVNQFMQCVSGRHVVRECPANKIFDRNLMSC 24
Y P F QC SG R C I+D++ ++C
Sbjct: 165 YKPDVYNCKNFYQCASGLWTQRSCGEGTIWDQHKLTC 201
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,840,144
Number of Sequences: 27780
Number of extensions: 329683
Number of successful extensions: 932
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -