Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f22
         (280 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54K37 Cluster: Putative uncharacterized protein; n=1; ...    33   1.2  
UniRef50_Q1PJI3 Cluster: Putative uncharacterized protein; n=7; ...    32   2.1  
UniRef50_Q640Z6 Cluster: NUP153 protein; n=5; Xenopus|Rep: NUP15...    32   2.8  
UniRef50_Q54UD0 Cluster: Putative uncharacterized protein; n=1; ...    32   2.8  
UniRef50_Q86KP3 Cluster: Similar to G-protein-coupled receptor a...    31   5.0  
UniRef50_Q83EB6 Cluster: Putative uncharacterized protein; n=4; ...    31   6.6  
UniRef50_Q55GE4 Cluster: Putative uncharacterized protein; n=5; ...    30   8.7  

>UniRef50_Q54K37 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 558

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -3

Query: 158 IKSVILTFWLKKWFNKNSENHLKILEPMLVIRRNNNHKMYFSLVNDNITYE 6
           +K  IL F+ KK   +N++N   IL+  +    N N+  YF +   NI YE
Sbjct: 65  LKDNILKFYNKK--KENNDNFFNILKSYITTNNNYNNHFYFIISIYNILYE 113


>UniRef50_Q1PJI3 Cluster: Putative uncharacterized protein; n=7;
           Prochlorococcus marinus|Rep: Putative uncharacterized
           protein - uncultured Prochlorococcus marinus clone
           HOT0M-1A11
          Length = 138

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +1

Query: 52  LLFLRITNIGSSIFKWFSEFLLNHFFNQKVKMT--DFIV 162
           LLFL I +I + +F  FS FLL   F  ++K+T  DFIV
Sbjct: 35  LLFLNIGSIPTIVFASFSFFLLLQSFTLRIKITNEDFIV 73


>UniRef50_Q640Z6 Cluster: NUP153 protein; n=5; Xenopus|Rep: NUP153
           protein - Xenopus laevis (African clawed frog)
          Length = 1605

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = -3

Query: 161 TIKSVILTFWLKKWFNKNSENHLKILEPMLVI-----RRNNNHKMYFSLVNDN 18
           T+KS++   WL+K+FNK  E H ++     VI      R NN + +  +V+D+
Sbjct: 49  TVKSIV-PGWLQKYFNKQEEEHDRVHSASEVIVNDTEARENNAEHHIYVVDDD 100


>UniRef50_Q54UD0 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 319

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 58  FLRITNIGSSIFKWFSEFLLNHFFNQKVKMTDF 156
           FLR  NI S+   W++   LN FFN+ V  T +
Sbjct: 85  FLREVNIDSNTVGWYTPTYLNSFFNESVIETQY 117


>UniRef50_Q86KP3 Cluster: Similar to G-protein-coupled receptor at
           plasma membrane; interactions in two-hybrid system with
           Gpa2p; Gpr1p; n=12; Dictyostelium discoideum|Rep:
           Similar to G-protein-coupled receptor at plasma
           membrane; interactions in two-hybrid system with Gpa2p;
           Gpr1p - Dictyostelium discoideum (Slime mold)
          Length = 1303

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 61  LRITNIGSSIFKWFSEFLLNHFFNQKVKMTDFIVN 165
           L+I+NI   +F     FLLN F+N+ + + + ++N
Sbjct: 627 LKISNIKEPLFGKLGTFLLNQFYNKNLNIFELLLN 661


>UniRef50_Q83EB6 Cluster: Putative uncharacterized protein; n=4;
           Coxiella burnetii|Rep: Putative uncharacterized protein
           - Coxiella burnetii
          Length = 578

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 143 LTFWLKKWFNKNSE--NHLKILEPMLVIRRNNNHKMYFSLVND 21
           L FWL+  F K+ +  N+LK+ +    I+R  N K    L+ND
Sbjct: 106 LAFWLESEFKKDEKYANYLKVSKVEYAIQRIGNSKAINELLND 148


>UniRef50_Q55GE4 Cluster: Putative uncharacterized protein; n=5;
            Eukaryota|Rep: Putative uncharacterized protein -
            Dictyostelium discoideum AX4
          Length = 5277

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
 Frame = -3

Query: 146  ILTFWLKKWFNKNSENHLK-ILEPMLVIRRNNNHKM--YFSLVNDN 18
            IL +W+ K F  N    LK I+ P+L ++ +N++ +   +S++NDN
Sbjct: 3465 ILQYWILKNFKSNIFLFLKNIINPILNLQNDNSNVLNSLYSVINDN 3510


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,124,819
Number of Sequences: 1657284
Number of extensions: 2550197
Number of successful extensions: 6959
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6956
length of database: 575,637,011
effective HSP length: 70
effective length of database: 459,627,131
effective search space used: 10111796882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)