Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f22
         (280 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   3.3  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    20   4.3  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    20   4.3  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    20   5.7  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    20   5.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      19   9.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      19   9.9  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -3

Query: 131 LKKWFNKNSENHLKILEPMLVIRRNNNH 48
           +K WF      + K+++   V   NNN+
Sbjct: 165 VKIWFQNRRSKYKKMMKAAQVSGGNNNN 192


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 20.2 bits (40), Expect = 4.3
 Identities = 4/15 (26%), Positives = 10/15 (66%)
 Frame = -3

Query: 149 VILTFWLKKWFNKNS 105
           +++  W+  W N+N+
Sbjct: 81  IVIISWVSFWLNRNA 95


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 20.2 bits (40), Expect = 4.3
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +1

Query: 85  SIFKWFSEFLLNHFFN 132
           +++K+F+ FL+  F+N
Sbjct: 410 TVWKFFNIFLITPFYN 425


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 19.8 bits (39), Expect = 5.7
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 3   CLVGYVIINKTKIHLVIIISTDY*HWLKY 89
           C +G V +    +HL  ++     H+L Y
Sbjct: 159 CEMGVVTLQAYTLHLFCVLYVVLLHFLTY 187


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 19.8 bits (39), Expect = 5.7
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 3   CLVGYVIINKTKIHLVIIISTDY*HWLKY 89
           C +G V +    +HL  ++     H+L Y
Sbjct: 159 CEMGVVTLQAYTLHLFCVLYVVLLHFLTY 187


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 19.0 bits (37), Expect = 9.9
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 5   SRRLCYH 25
           SRR CYH
Sbjct: 612 SRRCCYH 618


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 19.0 bits (37), Expect = 9.9
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 5   SRRLCYH 25
           SRR CYH
Sbjct: 504 SRRCCYH 510


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,984
Number of Sequences: 336
Number of extensions: 676
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  4684108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)