Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f22
         (280 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   0.65 
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    27   0.65 
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    26   0.86 
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    24   3.5  
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom...    24   3.5  
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    24   4.6  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    24   4.6  
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr...    23   8.0  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    23   8.0  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    23   8.0  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 26.6 bits (56), Expect = 0.65
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 140  TFWLKKWFNKNSENHLKILEPMLVIRRNNNHKMYFS 33
            TF  K+WF+K+ E +   LE  + ++RN+ + M+ S
Sbjct: 1561 TFLQKEWFDKDDELN---LEEKIALQRNSVYAMFNS 1593


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 0.65
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 137 FWLKKWFNKNSENHLKILEPMLVIRRNNNHK 45
           FW+ KW +++ E  LKI+  +    RN   K
Sbjct: 304 FWVTKWKSEHPEEFLKIIHKVEDFYRNGTLK 334


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 0.86
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 88  IFKWFSEFLLNHFFNQKVKMTD 153
           +F WFS F+LNH   Q++   D
Sbjct: 248 LFCWFSFFILNHPVKQRIFSID 269


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = -2

Query: 180 IXLAVIDNKISHFDFLVKEV 121
           + + +I++K+SHFD+L + +
Sbjct: 443 VQIKLIESKLSHFDYLDQHI 462


>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -3

Query: 128 KKWFNKNSENHLKILEPMLVIRRN---NNHKMYFSLVNDNITY 9
           K W  ++S+  + I  P  +   N   +NH+M ++  N+N+ Y
Sbjct: 173 KFWDFRSSDKFMSIEIPNQITCMNWSKSNHRMVYTADNNNLVY 215


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 62  RNNNHKMYFSLVNDNITYET 3
           RNN  +  FS+ N N+ +ET
Sbjct: 81  RNNIEQQLFSIQNANLNFET 100


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 122 WFNKNSENHLKILEPMLVIRRNNNHKMYFSLVNDNITYE 6
           W  K  ++  KI +  L  RRN   ++Y SL+N  +TY+
Sbjct: 368 WSPKALKSPTKISD--LETRRNIIQEVYDSLINIPVTYQ 404


>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 178

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 89 ILEPMLVIRRNNNHKMYFSLVNDNITYE 6
          I +P L   R+  H  YF+ ++ N T+E
Sbjct: 11 IKKPKLDQHRSRCHGAYFTCIDCNTTFE 38


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 131 LKKWFNKNSENHLKILEPMLVIRRNNNHKMYFS 33
           ++ W N+   +HL  + P  VI R N     F+
Sbjct: 796 IEHWVNEKVASHLMSVFPSKVILRKNQRPSDFA 828


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 61  LRITNIGSSIFKWFSEFL 114
           L +T +   IF+WF E+L
Sbjct: 466 LHLTVLDLKIFEWFKEYL 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 792,904
Number of Sequences: 5004
Number of extensions: 11067
Number of successful extensions: 36
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)