Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f22
         (280 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0521 - 25880616-25882362,25883036-25883412                       26   3.7  
02_05_0015 - 24992253-24993993,24995331-24995695                       26   3.7  
10_08_0673 + 19776227-19776322,19776446-19776641,19777119-197771...    26   4.9  
03_02_0948 - 12645972-12646010,12646612-12646750,12646846-126470...    25   8.6  

>04_04_0521 - 25880616-25882362,25883036-25883412
          Length = 707

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 61  LRITNIGSSIFKWFSEFLLNHFFN 132
           L I NIG  +F  FSE L+N F+N
Sbjct: 405 LAIANIGKLMFAQFSE-LVNEFYN 427


>02_05_0015 - 24992253-24993993,24995331-24995695
          Length = 701

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 61  LRITNIGSSIFKWFSEFLLNHFFN 132
           L I NIG  +F  FSE L+N F+N
Sbjct: 401 LAIANIGKLMFAQFSE-LVNEFYN 423


>10_08_0673 +
           19776227-19776322,19776446-19776641,19777119-19777199,
           19777265-19777316,19777451-19777572,19778377-19778477,
           19778650-19778708,19778807-19778863,19779227-19779272,
           19779506-19779585,19779675-19779735
          Length = 316

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 131 LKKWFNKNSENHLKILEPMLVIRRNNNHKMY 39
           LK+ F ++S+     +E  + +RRN+NH+ Y
Sbjct: 52  LKRLFAESSKFFELPMEEKIALRRNSNHRGY 82


>03_02_0948 -
           12645972-12646010,12646612-12646750,12646846-12647090,
           12647184-12647505,12647781-12648005,12648185-12648351,
           12648428-12648544,12648989-12649162,12649372-12649467,
           12649624-12649840,12650267-12650385,12650478-12650670,
           12651212-12651363,12651485-12651611,12651731-12651828
          Length = 809

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 86  LEPMLVIRRNNNHKMYFSLVNDNI 15
           LEP+L   R + HK +  ++ND I
Sbjct: 175 LEPLLDFLRGHRHKGHVMMLNDRI 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,326,649
Number of Sequences: 37544
Number of extensions: 50277
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)