Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f22
         (280 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81549-8|CAB04469.1|  285|Caenorhabditis elegans Hypothetical pr...    25   6.1  
AC084197-6|AAO38572.1|  328|Caenorhabditis elegans Serpentine re...    25   8.0  

>Z81549-8|CAB04469.1|  285|Caenorhabditis elegans Hypothetical
           protein F55C9.10 protein.
          Length = 285

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 161 TIKSVILTFWLKKWFNKNSENHLKILEP 78
           T++ V    WL K FNK S   L+I  P
Sbjct: 131 TLECVSTNVWLHKLFNKVSSGSLEITLP 158


>AC084197-6|AAO38572.1|  328|Caenorhabditis elegans Serpentine
           receptor, class v protein25 protein.
          Length = 328

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 20  YH*QD*NTSCDYYFYGLLTLAQVFLSGFQNFC 115
           Y  Q  NT   YY  G+  +A  FLS    FC
Sbjct: 247 YFSQTQNTGPIYYMRGMYPMANGFLSYINPFC 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,232,131
Number of Sequences: 27780
Number of extensions: 57261
Number of successful extensions: 181
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)