Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f22
         (280 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    26   0.099
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   3.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   4.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   4.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   4.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   4.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   4.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   4.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   4.9  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.8 bits (54), Expect = 0.099
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 110 NSENHLKILEPMLVIRRNNNHKMYFSLVNDNIT 12
           N   +  I++   ++ + NN K+Y S VN N+T
Sbjct: 508 NFSKNNTIVDISKLVNKRNNAKIYTSSVNSNLT 540


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 202 QEAFAKGLIKPG 237
           Q+A  KGL+KPG
Sbjct: 87  QDAEDKGLLKPG 98


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 4/15 (26%), Positives = 10/15 (66%)
 Frame = -3

Query: 149 VILTFWLKKWFNKNS 105
           +++  W+  W N+N+
Sbjct: 234 IVIISWVSFWLNRNA 248


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 4/15 (26%), Positives = 10/15 (66%)
 Frame = -3

Query: 149 VILTFWLKKWFNKNS 105
           +++  W+  W N+N+
Sbjct: 234 IVIISWVSFWLNRNA 248


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 104 ENHLKILEPMLVIRRNN 54
           ENHLK  + + VI RN+
Sbjct: 363 ENHLKNAKYLDVIERNS 379


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 104 ENHLKILEPMLVIRRNN 54
           ENHLK  + + VI RN+
Sbjct: 363 ENHLKNAKYLDVIERNS 379


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 104 ENHLKILEPMLVIRRNN 54
           ENHLK  + + VI RN+
Sbjct: 363 ENHLKNAKYLDVIERNS 379


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 4/15 (26%), Positives = 10/15 (66%)
 Frame = -3

Query: 149 VILTFWLKKWFNKNS 105
           +++  W+  W N+N+
Sbjct: 173 IVIISWVSFWLNRNA 187


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 58  FLRITNIGSSIFKWFSEFLLNHF 126
           FL +T   +    WF EF  +HF
Sbjct: 412 FLNLTVENNRRNPWFVEFWEHHF 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,286
Number of Sequences: 438
Number of extensions: 788
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5369883
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)