Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f21
         (188 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P08358 Cluster: Protein p26; n=9; Nucleopolyhedrovirus|...   106   1e-22
UniRef50_P11037 Cluster: Protein p26; n=8; Nucleopolyhedrovirus|...    43   0.001
UniRef50_Q77K96 Cluster: P26; n=3; Nucleopolyhedrovirus|Rep: P26...    39   0.019
UniRef50_Q9IBR1 Cluster: ORF129 p26; n=2; Nucleopolyhedrovirus|R...    36   0.23 
UniRef50_O55400 Cluster: P26; n=1; Buzura suppressaria NPV|Rep: ...    36   0.23 
UniRef50_Q0UR58 Cluster: Predicted protein; n=1; Phaeosphaeria n...    35   0.31 
UniRef50_Q4S6M0 Cluster: Chromosome undetermined SCAF14725, whol...    32   2.2  
UniRef50_Q0ICD8 Cluster: Prepilin-type N-terminal cleavage/methy...    31   3.8  
UniRef50_Q35945 Cluster: Yeast (S.uvarum) mitochondria RF2; n=1;...    30   8.7  

>UniRef50_P08358 Cluster: Protein p26; n=9;
           Nucleopolyhedrovirus|Rep: Protein p26 - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 240

 Score =  106 bits (254), Expect = 1e-22
 Identities = 48/50 (96%), Positives = 49/50 (98%)
 Frame = +1

Query: 37  MELYNIKYAIDPTNKIVIEQVDNVDAFVHILXPGQEVFDETLSRYHQFPG 186
           MELYNIKYAIDPTNKIVIEQVDNVDAFVHIL PGQEVFDETLS+YHQFPG
Sbjct: 1   MELYNIKYAIDPTNKIVIEQVDNVDAFVHILEPGQEVFDETLSQYHQFPG 50


>UniRef50_P11037 Cluster: Protein p26; n=8;
           Nucleopolyhedrovirus|Rep: Protein p26 - Orgyia
           pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
          Length = 230

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = +1

Query: 94  QVDNVDAFVHILXPGQEVFDETLSRYHQFPG 186
           Q+   + FV +  PGQEVFD++L ++HQFPG
Sbjct: 17  QIGGQEVFVMVFEPGQEVFDKSLDQHHQFPG 47


>UniRef50_Q77K96 Cluster: P26; n=3; Nucleopolyhedrovirus|Rep: P26 -
           Helicoverpa armigera NPV
          Length = 267

 Score = 39.1 bits (87), Expect = 0.019
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 37  MELYNIKYAID-PTNKIVIEQVDNVDAFVHILXPGQEVFDETLSRYHQFPG 186
           ++ YN++Y ID   N+I+I +VDN    ++++   Q    +TL R H FPG
Sbjct: 21  LQRYNVEYTIDNDLNRILIHKVDNRTVSINVIGH-QSNDSDTLDRLHHFPG 70


>UniRef50_Q9IBR1 Cluster: ORF129 p26; n=2; Nucleopolyhedrovirus|Rep:
           ORF129 p26 - Spodoptera exigua MNPV
          Length = 278

 Score = 35.5 bits (78), Expect = 0.23
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 28  TDVMELYNIKYAID-PTNKIVIEQVDNVDAFVHILXPGQEV-FDETLSRYHQFPG 186
           +  M  +N+KY +D     ++++ VD     + ++ P  +   D+ L+  HQFPG
Sbjct: 16  SSTMAAFNVKYVVDHEARTMIVQSVDGRPVSIFVIPPNSDTNGDDKLTWLHQFPG 70


>UniRef50_O55400 Cluster: P26; n=1; Buzura suppressaria NPV|Rep: P26
           - Buzura suppressaria nuclear polyhedrosis virus (BsNPV)
          Length = 263

 Score = 35.5 bits (78), Expect = 0.23
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 19  LNRTDVMELYNIKYAIDPTNK-IVIEQVDNVDAFVHILXPGQEVFDETLSRYHQFPG 186
           L+      + N+ Y +D  NK I I  V+ V+  V I+ P  E         HQFPG
Sbjct: 12  LSTAKTSSINNVHYIVDEFNKSIKITHVNGVEVTVQIIPPHGEFSTREFDTMHQFPG 68


>UniRef50_Q0UR58 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 177

 Score = 35.1 bits (77), Expect = 0.31
 Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
 Frame = +1

Query: 16  RLNRTDVMELYNIKYAIDPTNKIVIEQVDN--VDAFVH-ILXPGQEVFDE 156
           RLN+ + ++LYN++ +   T ++VIE+ ++   D  +H IL   Q+VFDE
Sbjct: 91  RLNKAEYLQLYNLRPSTQVTLELVIEEANSRFTDDQLHEILAKCQQVFDE 140


>UniRef50_Q4S6M0 Cluster: Chromosome undetermined SCAF14725, whole
           genome shotgun sequence; n=3; Tetraodontidae|Rep:
           Chromosome undetermined SCAF14725, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 878

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +1

Query: 43  LYNIKYAIDPTNKIVIEQVDNVDAFVHIL 129
           L NI Y  DP NKI I+  D V A V +L
Sbjct: 373 LKNISYGKDPDNKIAIKNCDGVPALVRLL 401


>UniRef50_Q0ICD8 Cluster: Prepilin-type N-terminal
           cleavage/methylation domain protein; n=1; Synechococcus
           sp. CC9311|Rep: Prepilin-type N-terminal
           cleavage/methylation domain protein - Synechococcus sp.
           (strain CC9311)
          Length = 203

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -1

Query: 179 NWWYRLSVSSNTS*PGXRICTNASTLSTCSITILFVGSIAYLILYNSITSV 27
           N W   S ++NT       C +  TLS C IT+  VG+++ + L N I  V
Sbjct: 17  NRWKTYSTAANTI--KEITCDHGFTLSECIITVAIVGTLSSIALPNYINQV 65


>UniRef50_Q35945 Cluster: Yeast (S.uvarum) mitochondria RF2; n=1;
           Saccharomyces bayanus|Rep: Yeast (S.uvarum) mitochondria
           RF2 - Saccharomyces bayanus (Yeast) (Saccharomyces
           uvarum)
          Length = 101

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 13  IRLNRTDVMELYNIKYAIDPTNKIVIEQVDN 105
           I L +TD++ L NIKY ++ T+KI ++   N
Sbjct: 65  ITLKKTDIITLENIKYYLNLTSKIYVDNKYN 95


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,973,785
Number of Sequences: 1657284
Number of extensions: 2660572
Number of successful extensions: 7948
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7947
length of database: 575,637,011
effective HSP length: 42
effective length of database: 506,031,083
effective search space used: 10120621660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)