Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6f21
(188 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 26 0.75
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 24 2.3
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 24 2.3
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 24 2.3
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 23 4.0
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ... 23 4.0
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 23 5.3
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 23 5.3
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po... 23 5.3
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 22 9.3
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||... 22 9.3
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb... 22 9.3
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 22 9.3
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 22 9.3
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 0.75
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 40 ELYNIKYAIDPTNKIVIEQV 99
+LYNI+YA+ PT +I I ++
Sbjct: 621 QLYNIQYAMLPTKRISIRKL 640
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 24.2 bits (50), Expect = 2.3
Identities = 11/45 (24%), Positives = 20/45 (44%)
Frame = +1
Query: 34 VMELYNIKYAIDPTNKIVIEQVDNVDAFVHILXPGQEVFDETLSR 168
++ + NI D + + D +D H+L E+F + L R
Sbjct: 341 ILHMGNIDVGADRSGIARLLNPDEIDKLCHLLGVSPELFSQNLVR 385
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 24.2 bits (50), Expect = 2.3
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +1
Query: 52 IKYAIDPTNKIVIEQVDNVDAFVHILXPGQEVFDETLSRYHQFP 183
I Y DP + ++ E D V+AF I P +EV +E L Y Q P
Sbjct: 1155 IHYDPDPQDTVIEEDKDFVEAFFAI--PDEEV-EENL--YKQSP 1193
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 24.2 bits (50), Expect = 2.3
Identities = 8/33 (24%), Positives = 22/33 (66%)
Frame = -3
Query: 120 HKCVHIVDLLYYNFICWIDCIFNIIQFHNVRSI 22
++C+ + YY+ I ++ +F ++ F+++R+I
Sbjct: 262 YECLWLSCHFYYSIIYLLNSMFYLLTFYSLRAI 294
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 23.4 bits (48), Expect = 4.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 114 CVHIVDLLYYNFICWIDCIF 55
C H ++L +NF +DC F
Sbjct: 486 CTHSSEILVWNFDDGLDCTF 505
>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 282
Score = 23.4 bits (48), Expect = 4.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 31 DVMELYNIKYAIDPTNKIVIEQ 96
D M YN K + DPT+ ++ ++
Sbjct: 89 DAMSYYNSKLSEDPTHTVIYKR 110
>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 23.0 bits (47), Expect = 5.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 46 YNIKYAIDPTNKIVIEQVDNVDAFVHILXPG 138
Y KYAI+ ++ + ++ ++ V I+ PG
Sbjct: 115 YGTKYAIEGISEALTWEMQSIGVKVKIIEPG 145
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 23.0 bits (47), Expect = 5.3
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -1
Query: 119 TNASTLSTCSITILFVGSIAYLI---LYNSITSVRFNRIAR 6
T + L+ C I +F+ S+ YLI L+ + + + N I R
Sbjct: 440 TLSGLLTGCGILTIFMQSLIYLIDAYLFRAASVIAANTIMR 480
>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 236
Score = 23.0 bits (47), Expect = 5.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 46 YNIKYAIDPTNKIVIEQVDNVDAFVHILXPG 138
Y KYAI+ ++ + ++ ++ V I+ PG
Sbjct: 115 YGTKYAIEGISEALTWEMQSIGVKVKIIEPG 145
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 22.2 bits (45), Expect = 9.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 103 NVDAFVHILXPGQEVFDETLSRYHQFPG 186
N DA + + +E +DE L+RY + G
Sbjct: 806 NYDAQLSKISEIKENYDELLTRYRELEG 833
>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 225
Score = 22.2 bits (45), Expect = 9.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 116 NASTLSTCSITILFVGSIAYLIL 48
+A + S C IT+L + IA L+L
Sbjct: 199 SADSKSGCCITVLIIILIALLVL 221
>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 240
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/37 (24%), Positives = 18/37 (48%)
Frame = +1
Query: 31 DVMELYNIKYAIDPTNKIVIEQVDNVDAFVHILXPGQ 141
D++ + I P ++ + E + F+H+L P Q
Sbjct: 93 DLLHVIEGLVLIHPKSQTLFEDKATLRLFIHLLQPSQ 129
>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 286
Score = 22.2 bits (45), Expect = 9.3
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = -3
Query: 156 FVEHFLTRX*DMHKCVHIVDLLYY 85
F++ +LTR D+ ++ +++YY
Sbjct: 246 FIDSYLTRLVDIAISKNVTEIMYY 269
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 22.2 bits (45), Expect = 9.3
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = -3
Query: 108 HIVDLLYYNFICWIDCIFNIIQFHNVR 28
H++ Y +CW D F+ + N+R
Sbjct: 624 HVIIGSYDKRLCWFDLDFSSKPYKNLR 650
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 780,561
Number of Sequences: 5004
Number of extensions: 11663
Number of successful extensions: 28
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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