Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6f21
(188 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0163 + 17865529-17865801,17866030-17866102,17866251-17866270 29 0.69
08_01_0077 + 546473-546512,546739-547013,547772-547885,548002-55... 28 1.2
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 27 2.8
01_06_0899 + 32837027-32837215,32837366-32837547,32839056-328391... 26 4.9
01_03_0231 + 14014243-14014390,14015053-14015141,14017859-140179... 26 4.9
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 25 6.4
04_01_0347 - 4546566-4546604,4546710-4546748,4546834-4547059,454... 25 6.4
03_02_0601 - 9754281-9754340,9754978-9755061,9755384-9755585,975... 25 6.4
10_01_0169 - 1899491-1899666,1901358-1901638,1902468-1902477,190... 25 8.5
03_03_0235 - 15688002-15688040,15688146-15688184,15688270-156885... 25 8.5
>03_04_0163 + 17865529-17865801,17866030-17866102,17866251-17866270
Length = 121
Score = 28.7 bits (61), Expect = 0.69
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -1
Query: 176 WWYRLSVSSNTS*PGXRICTNASTLSTCSITILFVGSIAYLILY 45
WW+ + S+ S P + + S + LFVG++A ++++
Sbjct: 78 WWWSIGASAVDSQPWRSVTLSGSRSGASLLLGLFVGNVAIILIW 121
>08_01_0077 +
546473-546512,546739-547013,547772-547885,548002-550245
Length = 890
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 52 IKYAIDPTNKIVIEQVDNVDAFVHILXPG 138
+ +I+ NKI I D VD +H+L G
Sbjct: 621 LNLSINDNNKIAIANADAVDPLIHVLETG 649
>12_02_0318 -
17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 179 NWWYRLSVSSNTS*PGXRICTNASTLSTCSIT 84
NWW + S +S + P + T A S CS++
Sbjct: 551 NWWLKFSNTSMSDVPLIKYVTGADCPSYCSVS 582
>01_06_0899 +
32837027-32837215,32837366-32837547,32839056-32839102,
32839426-32839500,32839595-32839726,32839800-32839972,
32840005-32840277,32840386-32840519,32840640-32840726,
32840834-32840948
Length = 468
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 132 TGSRSVRRNAKPVPPISW 185
TG RSVR N+ PVP W
Sbjct: 422 TGDRSVRPNSWPVPKPFW 439
>01_03_0231 +
14014243-14014390,14015053-14015141,14017859-14017949,
14018088-14018215,14018703-14018784,14019022-14019081,
14019160-14019251,14019342-14019462,14019873-14019928,
14020193-14020272,14020774-14020820,14020940-14020989,
14021304-14021366,14021515-14021595,14021703-14021717,
14021875-14021985,14022072-14022147,14022350-14022492,
14022721-14022794,14023364-14023454,14023589-14023687
Length = 598
Score = 25.8 bits (54), Expect = 4.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +1
Query: 100 DNVDAFVHILXPGQEVFDETLSR 168
DN+ H+L G E++D T+++
Sbjct: 141 DNIKTAYHVLQVGDEIYDATMNQ 163
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 135 GSRSVRRNAKPVPPI 179
G R V RNA+P PP+
Sbjct: 455 GPREVERNAQPAPPL 469
>04_01_0347 -
4546566-4546604,4546710-4546748,4546834-4547059,
4547222-4547374,4547453-4547706,4547734-4548366,
4548453-4548899,4548978-4549277,4549386-4549697,
4550190-4550243
Length = 818
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 28 TDVMELYNIKYAIDPTNKIVIEQVDNVDAF 117
TD++ ++ K +DPTN IV++ D D +
Sbjct: 623 TDILGEHDGKSFLDPTNYIVVDFKDLFDLY 652
>03_02_0601 -
9754281-9754340,9754978-9755061,9755384-9755585,
9755663-9755730,9755999-9756094,9756307-9756508,
9756590-9756661,9756786-9756826,9757016-9757089,
9757991-9758026,9758486-9758720
Length = 389
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 70 PTNKIVIEQVDNVDAFVHILXPGQEVFDE 156
P K +++Q DN++ + P +VF+E
Sbjct: 173 PFKKWIVQQPDNINLMSEKVHPSYDVFEE 201
>10_01_0169 -
1899491-1899666,1901358-1901638,1902468-1902477,
1902696-1902786,1903993-1904031,1904117-1904405,
1904488-1904658,1904737-1905623,1905711-1906157,
1906236-1906460,1906536-1906943
Length = 1007
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 28 TDVMELYNIKYAIDPTNKIVIEQVDNVDAF 117
TD++ ++ K +DPTN IV++ D D +
Sbjct: 612 TDILGQHDGKPFLDPTNYIVVDFNDLFDLY 641
>03_03_0235 -
15688002-15688040,15688146-15688184,15688270-15688558,
15688641-15688811,15688907-15689400,15690377-15690819,
15690921-15690933
Length = 495
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 28 TDVMELYNIKYAIDPTNKIVIEQVDNVDAF 117
TD++E ++ K + PTN IV++ D D +
Sbjct: 279 TDILEEHDGKPFLGPTNYIVVDFKDLFDLY 308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,852,911
Number of Sequences: 37544
Number of extensions: 69748
Number of successful extensions: 222
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 14,793,348
effective HSP length: 42
effective length of database: 13,216,500
effective search space used: 264330000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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