Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f21
         (188 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X60218-1|CAA42779.1|  363|Drosophila melanogaster Sd protein pro...    29   0.65 
AY058422-1|AAL13651.1|  349|Drosophila melanogaster GH20044p pro...    29   0.65 
AE014134-3097|AAF53800.1|  349|Drosophila melanogaster CG10234-P...    29   0.65 

>X60218-1|CAA42779.1|  363|Drosophila melanogaster Sd protein
           protein.
          Length = 363

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 16  RLNRTDVMELYNIKYAIDPTNKIVIEQVDNVDAFVHILX-PGQEVFDETLSRYHQ 177
           R+ +T      NI Y +   NK  +  + NV A +H+L  P Q  F   +SR+H+
Sbjct: 79  RVPKTGSTSFVNIAYDLCKPNKFHVLHI-NVTANMHVLSLPNQIQFVRNVSRWHE 132


>AY058422-1|AAL13651.1|  349|Drosophila melanogaster GH20044p
           protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 16  RLNRTDVMELYNIKYAIDPTNKIVIEQVDNVDAFVHILX-PGQEVFDETLSRYHQ 177
           R+ +T      NI Y +   NK  +  + NV A +H+L  P Q  F   +SR+H+
Sbjct: 79  RVPKTGSTSFVNIAYDLCKPNKFHVLHI-NVTANMHVLSLPNQIQFVRNVSRWHE 132


>AE014134-3097|AAF53800.1|  349|Drosophila melanogaster CG10234-PA
           protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 16  RLNRTDVMELYNIKYAIDPTNKIVIEQVDNVDAFVHILX-PGQEVFDETLSRYHQ 177
           R+ +T      NI Y +   NK  +  + NV A +H+L  P Q  F   +SR+H+
Sbjct: 79  RVPKTGSTSFVNIAYDLCKPNKFHVLHI-NVTANMHVLSLPNQIQFVRNVSRWHE 132


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,349,234
Number of Sequences: 53049
Number of extensions: 124902
Number of successful extensions: 376
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 24,988,368
effective HSP length: 43
effective length of database: 22,707,261
effective search space used: 431437959
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)