Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6f21
(188 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040643-2|AAB94961.1| 471|Caenorhabditis elegans Hypothetical ... 26 3.2
Z50863-3|CAA90735.1| 830|Caenorhabditis elegans Hypothetical pr... 25 5.6
AF040657-6|AAB95051.2| 261|Caenorhabditis elegans Hypothetical ... 25 5.6
AF016679-5|AAB66157.1| 485|Caenorhabditis elegans Hypothetical ... 25 5.6
Z29443-5|CAA82572.1| 182|Caenorhabditis elegans Hypothetical pr... 25 7.5
L26545-1|AAA20081.1| 182|Caenorhabditis elegans CYT-1 protein. 25 7.5
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 25 9.9
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 25 9.9
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 25 9.9
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 25 9.9
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 25 9.9
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu... 25 9.9
>AF040643-2|AAB94961.1| 471|Caenorhabditis elegans Hypothetical
protein F14D2.7 protein.
Length = 471
Score = 26.2 bits (55), Expect = 3.2
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -3
Query: 84 NFICWIDCIFNII 46
N +CW++CI NI+
Sbjct: 188 NHLCWLNCILNIL 200
>Z50863-3|CAA90735.1| 830|Caenorhabditis elegans Hypothetical
protein C14H10.3 protein.
Length = 830
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +1
Query: 28 TDVMELYNIKYAIDPTNKIVIEQVDNVDAFVHILXPGQEVFDETLSR 168
+DV +L+N+ + K + +D+ H++ G E +E L +
Sbjct: 672 SDVKDLHNLVEMVAQKGKEIENSQQYLDSLAHLIRQGIEAANEALRK 718
>AF040657-6|AAB95051.2| 261|Caenorhabditis elegans Hypothetical
protein T20H9.2 protein.
Length = 261
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/44 (22%), Positives = 22/44 (50%)
Frame = -3
Query: 147 HFLTRX*DMHKCVHIVDLLYYNFICWIDCIFNIIQFHNVRSIQS 16
HF T + +C HI ++ +F W + + ++ + ++QS
Sbjct: 55 HFTTELAKLEECFHIKEICLISF--WEEYVLRMLSLFDATTLQS 96
>AF016679-5|AAB66157.1| 485|Caenorhabditis elegans Hypothetical
protein T28C12.2 protein.
Length = 485
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 125 ICTNASTLSTCSITILFVGSIAYLILYNSIT 33
I TN +ST T+L+ + ILYN IT
Sbjct: 265 IATNVEVMSTPLTTVLYDWKDSDSILYNGIT 295
>Z29443-5|CAA82572.1| 182|Caenorhabditis elegans Hypothetical
protein T07C4.7 protein.
Length = 182
Score = 25.0 bits (52), Expect = 7.5
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = -1
Query: 95 CSITILFVGSIAYLILYNSITSVRF 21
C++T +F IA+ I+++++ +RF
Sbjct: 112 CAVTAVFKYIIAFPIIFHTLNGIRF 136
>L26545-1|AAA20081.1| 182|Caenorhabditis elegans CYT-1 protein.
Length = 182
Score = 25.0 bits (52), Expect = 7.5
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = -1
Query: 95 CSITILFVGSIAYLILYNSITSVRF 21
C++T +F IA+ I+++++ +RF
Sbjct: 112 CAVTAVFKYIIAFPIIFHTLNGIRF 136
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 24.6 bits (51), Expect = 9.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = -1
Query: 164 LSVSSNTS*PGXRICTNASTLSTCSITILFV----GSIAYLILYNSITSVRFNR 15
+ VSSN + P R+CT +T ++F+ GSI + N + +RF R
Sbjct: 620 VDVSSNANLPPGRVCTVQTTCPKQKTDLVFLIDGSGSIGSYVFKNEV--LRFVR 671
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 24.6 bits (51), Expect = 9.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = -1
Query: 164 LSVSSNTS*PGXRICTNASTLSTCSITILFV----GSIAYLILYNSITSVRFNR 15
+ VSSN + P R+CT +T ++F+ GSI + N + +RF R
Sbjct: 1204 VDVSSNANLPPGRVCTVQTTCPKQKTDLVFLIDGSGSIGSYVFKNEV--LRFVR 1255
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 24.6 bits (51), Expect = 9.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = -1
Query: 164 LSVSSNTS*PGXRICTNASTLSTCSITILFV----GSIAYLILYNSITSVRFNR 15
+ VSSN + P R+CT +T ++F+ GSI + N + +RF R
Sbjct: 620 VDVSSNANLPPGRVCTVQTTCPKQKTDLVFLIDGSGSIGSYVFKNEV--LRFVR 671
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 24.6 bits (51), Expect = 9.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = -1
Query: 164 LSVSSNTS*PGXRICTNASTLSTCSITILFV----GSIAYLILYNSITSVRFNR 15
+ VSSN + P R+CT +T ++F+ GSI + N + +RF R
Sbjct: 1204 VDVSSNANLPPGRVCTVQTTCPKQKTDLVFLIDGSGSIGSYVFKNEV--LRFVR 1255
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 24.6 bits (51), Expect = 9.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = -1
Query: 164 LSVSSNTS*PGXRICTNASTLSTCSITILFV----GSIAYLILYNSITSVRFNR 15
+ VSSN + P R+CT +T ++F+ GSI + N + +RF R
Sbjct: 1204 VDVSSNANLPPGRVCTVQTTCPKQKTDLVFLIDGSGSIGSYVFKNEV--LRFVR 1255
>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
(myotubularin) family protein 5 protein.
Length = 1744
Score = 24.6 bits (51), Expect = 9.9
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -3
Query: 84 NFICWIDCIFNIIQ 43
+FIC++DC++ I Q
Sbjct: 1337 SFICFLDCVYQISQ 1350
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,364,696
Number of Sequences: 27780
Number of extensions: 66919
Number of successful extensions: 193
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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