Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6f18
(613 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 168 3e-42
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 156 1e-38
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 120 6e-28
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 100 9e-22
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.023
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 31 0.86
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 6.0
AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical ... 28 6.0
AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical ... 28 6.0
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 168 bits (408), Expect = 3e-42
Identities = 77/140 (55%), Positives = 99/140 (70%)
Frame = +3
Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 369 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 548
+A+ FK+L+KYRPE+ RPNT+R G NT+T+LVE
Sbjct: 90 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149
Query: 549 KKKAQLVVIAHDVDPIELVL 608
++AQLV+IAHDV+P+E+VL
Sbjct: 150 TRRAQLVLIAHDVNPLEIVL 169
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 156 bits (379), Expect = 1e-38
Identities = 77/140 (55%), Positives = 99/140 (70%)
Frame = +3
Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 369 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 548
+A+ FK+L+KYRPE+ RPNT+R G NT+T+LVE
Sbjct: 90 SQSARQAFKLLDKYRPES--------------------TEVTKRPNTVRHGVNTITRLVE 129
Query: 549 KKKAQLVVIAHDVDPIELVL 608
++AQLV+IAHDV+P+E+VL
Sbjct: 130 TRRAQLVLIAHDVNPLEIVL 149
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 120 bits (290), Expect = 6e-28
Identities = 52/78 (66%), Positives = 65/78 (83%)
Frame = +3
Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Query: 369 KTTAKGLFKILEKYRPET 422
+A+ FK+L+KYRPE+
Sbjct: 193 SHSARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 100 bits (239), Expect = 9e-22
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +3
Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -3
Query: 464 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 345
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 30.7 bits (66), Expect = 0.86
Identities = 10/33 (30%), Positives = 23/33 (69%)
Frame = +3
Query: 510 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVL 608
++ G N TK + + ++++V+A D +P+E++L
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILL 67
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 337 LRSTNLPRHWTRLQLRA 387
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical
protein Y19D10A.9 protein.
Length = 296
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 287 PHPASEGCTSASSESAPSDQPIYPDTG 367
P S G T PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221
>AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical
protein F56A4.2 protein.
Length = 296
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 287 PHPASEGCTSASSESAPSDQPIYPDTG 367
P S G T PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,661,890
Number of Sequences: 27780
Number of extensions: 203096
Number of successful extensions: 555
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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