Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f16
         (362 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   0.14 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.14 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   2.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   2.9  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   5.1  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    20   9.0  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 0.14
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 303 WKWMLSLGWLVYGIGDLMI 247
           +KW+  L W  YG G LMI
Sbjct: 585 FKWLSFLSWFRYGNGALMI 603


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 0.14
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 303 WKWMLSLGWLVYGIGDLMI 247
           +KW+  L W  YG G LMI
Sbjct: 585 FKWLSFLSWFRYGNGALMI 603


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +2

Query: 206 HQATLPCDLGYINPIIKSPIPYTNHPRLNIHFHXSPDAVL 325
           H   L      + P  K  +P  NH  LN+     P A++
Sbjct: 239 HPPHLSSHPAIVTPGPKQELPDLNHKPLNLTIKKMPIAIV 278


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +2

Query: 206 HQATLPCDLGYINPIIKSPIPYTNHPRLNIHFHXSPDAVL 325
           H   L      + P  K  +P  NH  LN+     P A++
Sbjct: 131 HPPHLSSHPAIVTPGPKQELPDLNHKPLNLTIKKMPIAIV 170


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +3

Query: 213 PPSPAISATSTRSSNPRFHTPTTPDLTSISXNPLTPY*KEFAP 341
           P  P    +  RSS+P+   PT P +   +     P  K   P
Sbjct: 79  PQWPFAWGSLXRSSSPQTSAPTGPPIVRCALRKHKPNRKPRTP 121


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 9.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 207 IKPPSPAISATSTRSSNPRF 266
           I PP+P  S TST  S   F
Sbjct: 7   IGPPTPHESNTSTPVSKSAF 26


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,156
Number of Sequences: 336
Number of extensions: 1627
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7404950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)