Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f16
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    29   0.29 
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    29   0.29 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   0.68 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   0.90 
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   1.2  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    26   2.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   2.7  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   2.7  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    25   3.6  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   4.8  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   4.8  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    24   6.3  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    24   8.3  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    24   8.3  

>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 28.7 bits (61), Expect = 0.29
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 210 KPPSPAISATSTRSSNPRFHTPTTPDLTSISXNPLTPY 323
           +PPS A+  +   +  P    P  P +  +  NP TP+
Sbjct: 245 RPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPF 282


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 28.7 bits (61), Expect = 0.29
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 210 KPPSPAISATST-RSSNPRFHTPTTPDLTSISXNPLTPY*KEFAPGLKXSVV 362
           KPP P +   ST RSS+P  +  T  D + ++    +PY    AP  + S++
Sbjct: 305 KPPKPPLRKVSTQRSSSPIENLATKSDASLVTGLQSSPY-THIAPASEMSLI 355


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.5 bits (58), Expect = 0.68
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +3

Query: 216 PSPAISATSTRSSN---PRFHTPTTPDLTSISXNPLT 317
           P P+IS T+T SS       H PTTPD       PLT
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPD--HFKLTPLT 307


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 0.90
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 219 SPAISATSTRSSNPRFHTPTTPDLTSIS 302
           S  IS +ST   N  FH PT    TS S
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSS 828


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +2

Query: 20  IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 109
           +K  RD YL NLEA  FPS+  +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +2

Query: 2   GNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGGNVLATPSSS 175
           GN+S  S I   R     N  A  FPS  S  +P  VDL     DV+ E    L+TP  S
Sbjct: 324 GNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQMDVSDEEQRFLSTPLGS 382


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
 Frame = +2

Query: 59  AVVFPSAPSLKIPVTVDLCWTTADVTVEGGNVLATPSSSRITIGGLALMHQATLPCDLGY 238
           +V + S P    P+T   C T+  +      V +TP ++       ++ + +T      Y
Sbjct: 455 SVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNY 514

Query: 239 I----NPIIKSPIPYTN 277
                 P+  +P+  TN
Sbjct: 515 TISSSTPVTSTPVTTTN 531



 Score = 25.4 bits (53), Expect = 2.7
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
 Frame = +2

Query: 29  YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGGNVLATPSSSRITIGGLALMH 208
           Y    + +    +  S P    PVT   C T+  V      V +TP ++       ++ +
Sbjct: 504 YTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPY 563

Query: 209 QATLPCDLGYI----NPIIKSPIPYTN 277
            +T      Y      P+  +P+  TN
Sbjct: 564 TSTPVTSSNYTISSSTPVTSTPVTTTN 590



 Score = 25.0 bits (52), Expect = 3.6
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +2

Query: 59  AVVFPSAPSLKIPVTVDLCWTTADVTVEGGNVLATPSSSRITIGGLALMHQAT--LPCDL 232
           +V + S P    P+    C T+  V      V +TP ++       ++ + +T      L
Sbjct: 432 SVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPL 491

Query: 233 GYINPIIKSPIPYTNHP 283
              N    + +PYT+ P
Sbjct: 492 TTTNCTTSTSVPYTSTP 508


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 200 LMHQATLPCDLGYINPIIKSPIPYTNHP 283
           + HQA L C  GY + +    +P+ N P
Sbjct: 348 ICHQAILRCIYGYYHNLSLEELPFINVP 375


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 189 PIVMREDEGVASTLPPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 55
           P  ++E   +  TL  +T+T   V   + +  +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 145 RQCAGHPFILSHYYWRSRPYASSHPPLRSRLHQP 246
           +Q  G+ F   + YW   P     PP+ ++L+ P
Sbjct: 377 QQVTGYQFDDENNYWMILPADHYDPPIEAKLNVP 410


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 216 PSPAISATSTRSSNPRFHTPTTPDLTSISXNPLTP 320
           P  ++S+         FHTPT P  T +S    +P
Sbjct: 123 PPNSLSSQPKHQEFHLFHTPTIPRTTQLSSKTSSP 157


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1009

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 12/55 (21%), Positives = 22/55 (40%)
 Frame = -3

Query: 186  IVMREDEGVASTLPPSTVTSAVVQQRSTVTGILRLGAEGKTTASRLTRYASR*PF 22
            +++ E+E   S LPP  +   ++        + +   E K     +TR     PF
Sbjct: 872  LILEEEEHGKSILPPEKIEKLIICSGQVWVALSKAREENKIDNIAITRVEQLHPF 926


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 207 IKPPSPAISATSTRSSNPRFHT 272
           ++PPS    AT+T S +  FHT
Sbjct: 400 LEPPSSPSHATATSSLHTLFHT 421


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 219 SPAISATSTRSSNPRFHTPTTPDLTSIS 302
           SP+ S +S++ S+  F T TTP  +S S
Sbjct: 211 SPSSSKSSSKFSSSSFITSTTPASSSSS 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,361,151
Number of Sequences: 5004
Number of extensions: 25526
Number of successful extensions: 106
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)