Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6f16
(362 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 33 0.091
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.21
11_06_0610 - 25449085-25453284 31 0.37
12_02_0329 + 17585046-17585561 29 1.5
01_05_0227 - 19512866-19514983 29 1.5
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 28 2.6
09_02_0252 - 6315834-6315959,6316074-6317018 27 3.4
08_02_1474 - 27365548-27366054 27 3.4
02_04_0486 - 23351960-23353093 27 3.4
02_04_0483 - 23305492-23306625 27 3.4
12_02_0985 + 25052753-25053691 27 4.5
10_02_0139 + 5753426-5754841,5755566-5755655,5756011-5756379,575... 27 4.5
09_02_0082 - 4060018-4061604 27 4.5
05_05_0329 - 24135654-24135848,24136273-24136404 27 4.5
03_02_0253 - 6839543-6839623,6839725-6839805,6839935-6839976,684... 27 4.5
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 27 4.5
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225... 27 6.0
07_01_0544 + 4012457-4012796,4012897-4013069 27 6.0
02_01_0302 - 2021221-2023305 27 6.0
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 26 7.9
01_06_0404 + 29098141-29098214,29098459-29098673,29099491-290995... 26 7.9
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 32.7 bits (71), Expect = 0.091
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +3
Query: 207 IKPPSPAISATSTR-SSNPR--FHTPTTPDLTSISXNPLTP 320
I PPSPA + S+R S +PR F TP T T+ S +P +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.21
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 225 AISATSTRSSNPRFHTPTTP 284
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.7 bits (66), Expect = 0.37
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 213 PPSPAISATSTRSSNPRFHTPTTPDLTSIS-XNPLTPY*KEFAP 341
PP+P A+S P HTP+ P+ T S +P TP K +P
Sbjct: 618 PPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP 661
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 213 PPSPAISATSTRSSNPRFHTPTTPDLT-SISXNPLTPY*KEFAP 341
PP+P A+S P HTP+ P T +P TP + +P
Sbjct: 651 PPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSP 694
>12_02_0329 + 17585046-17585561
Length = 171
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -2
Query: 244 VDVAEIAGEGGLMHKGETANSNARG*RGGQHIASFNCDVSSSPTKVNCDGYFEARGG 74
V VA+ +G+G K TA S G GG+ A++ C + C G+ +GG
Sbjct: 91 VIVADASGDGSAAPKSGTAGSTHPGPEGGRSAAAWLCRSHNH----RCHGHGGGKGG 143
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 141 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 49
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>06_01_0018 +
194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 216 PSPAISATSTRSSNPRFHTPTTPDLT 293
PSP +A TRSS+ R H TP T
Sbjct: 9 PSPTSTARETRSSSARGHASPTPTPT 34
>09_02_0252 - 6315834-6315959,6316074-6317018
Length = 356
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 213 PPSPAISATSTRSSNPRFHTP 275
P SP +S +S+R+ +PR H P
Sbjct: 46 PSSPRLSTSSSRTPSPRAHRP 66
>08_02_1474 - 27365548-27366054
Length = 168
Score = 27.5 bits (58), Expect = 3.4
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = -2
Query: 298 MDVKSGVVGVWNRGFDDRVDVAEIAGEGGLMHKGETANSNARG*RGG 158
M G VGVW R D AG G + +G A RG RGG
Sbjct: 78 MGALCGEVGVWRRKIGDSRRSGGAAGGGAAVGRG--AAVGGRGARGG 122
>02_04_0486 - 23351960-23353093
Length = 377
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 116 WTTADVTVEGGNVLATPSSSRITIGGL 196
W D VEG +LA P S+ + GGL
Sbjct: 172 WELTDFDVEGPQLLAAPISNPVLHGGL 198
>02_04_0483 - 23305492-23306625
Length = 377
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 116 WTTADVTVEGGNVLATPSSSRITIGGL 196
W D VEG +LA P S+ + GGL
Sbjct: 172 WELTDFDVEGPQLLAAPISNPVLHGGL 198
>12_02_0985 + 25052753-25053691
Length = 312
Score = 27.1 bits (57), Expect = 4.5
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -3
Query: 204 IRARPPIVMREDEGVASTLPPSTVTSAVVQQRSTVTGILRLGAEGKTTASRLTRYASR*P 25
+ +R + +R D S+ +T S + S + GAEG TTAS LT S P
Sbjct: 127 VSSRTGLFLRGDCHRNSSASNATNCSIPAETMSRMVPTASCGAEGNTTASALTCVTSTSP 186
>10_02_0139 +
5753426-5754841,5755566-5755655,5756011-5756379,
5756796-5756982,5757567-5757631
Length = 708
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 143 GGNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNH 280
GG PS+S GG+ + D G++ I+++P P T H
Sbjct: 12 GGGGGPHPSASPSAAGGVPSSSSSEASLDGGFLLRILQNPPPQTRH 57
>09_02_0082 - 4060018-4061604
Length = 528
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +2
Query: 80 PSLKIPVTVDLCWTTADVTVEGGNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKS 259
PS+ +P+ + + TTA + G ++ ++ R I LAL A C ++P +
Sbjct: 117 PSVPVPLGLTMSPTTAHYSFSYGGASSSSATPRAPIAPLALRAPAPHLCVPRVLSPPAPT 176
Query: 260 PIPYTNH 280
P H
Sbjct: 177 PPVLATH 183
>05_05_0329 - 24135654-24135848,24136273-24136404
Length = 108
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 127 SSSPTKVNCDGYFEARGGRENDSLKIDKIRVAVA 26
+ P V G +A GREND ++ R AVA
Sbjct: 5 AQQPRGVKVGGIHDAPAGRENDLTTVELARFAVA 38
>03_02_0253 -
6839543-6839623,6839725-6839805,6839935-6839976,
6840604-6840695,6840789-6840858,6841645-6841737,
6841926-6842002,6842614-6842800
Length = 240
Score = 27.1 bits (57), Expect = 4.5
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +2
Query: 122 TADVTVEGGNVL----ATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPRL 289
TAD V V+ +TP +R I G + H AT+ L N +KS +
Sbjct: 116 TADQVVVHDGVIREKPSTPEEARKFIKGYSESHAATIGSVL-VTN--VKSGARKEGWDKA 172
Query: 290 NIHFHXSPDAVLEGI 334
++FH PD V+E +
Sbjct: 173 EVYFHKIPDEVVESL 187
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +3
Query: 213 PPSPAISATSTRSSNPRFHTPT---TPDLTSISXNPLTP 320
PPSP+I + T +TPT TP S +P TP
Sbjct: 105 PPSPSIGTSPTTPGGGGGYTPTPSDTPPSPSSDTSPSTP 143
>12_01_0298 -
2250517-2251235,2251331-2251577,2251615-2252951,
2256029-2256188
Length = 820
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 207 IKPPSPAISATSTRSSNPRFHTPTTPD 287
+ P +PA S++S SS+P TP + D
Sbjct: 330 VVPSNPAASSSSVASSSPALATPESRD 356
>07_01_0544 + 4012457-4012796,4012897-4013069
Length = 170
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +3
Query: 204 CIKPPSPAISATSTRSSNPRFHTPTTPDLTSISXNPLTPY*KEFAP 341
C P + S ++ P TPTTP T P TP AP
Sbjct: 102 CKVQTPPVSNCKSGAAAPPAGQTPTTPAGTGSKATPATPVGSGVAP 147
>02_01_0302 - 2021221-2023305
Length = 694
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 213 PPSPAISATSTRSSNPRFHTPTTP 284
PPS + +T S P FH P TP
Sbjct: 618 PPSHSHPSTPPSPSGPSFHPPPTP 641
>07_03_0909 +
22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 26.2 bits (55), Expect = 7.9
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +2
Query: 98 VTVDLCWTTA------DVTVEGGNVLATPSSSRITIGGLALMHQATLPCDLGYIN 244
+T WTTA + ++G +VL TP S + ++L H T PC + ++
Sbjct: 340 ITHRFAWTTAVSETSIALVIDGSHVLVTPLSLGLMPPPMSLFH-LTFPCAVNEVS 393
>01_06_0404 +
29098141-29098214,29098459-29098673,29099491-29099596,
29099686-29100235,29100332-29100429,29100519-29100764,
29100867-29100981,29101092-29101305,29101402-29101991
Length = 735
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 216 PSPAISATSTRSSNPRFHTPTTPDLTSISXNPLTPY*KEFAP 341
P+P ++A S+R NP PD+T+ + + Y + +P
Sbjct: 447 PAPVMAAFSSRGPNPITPQILKPDITAPGVSVIAAYSEAVSP 488
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,834,610
Number of Sequences: 37544
Number of extensions: 203128
Number of successful extensions: 778
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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