Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f16
         (362 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    30   0.43 
Z70213-6|CAA94176.1|  167|Caenorhabditis elegans Hypothetical pr...    29   1.00 
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical ...    29   1.3  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    28   1.7  
U70852-3|AAK29822.1|  836|Caenorhabditis elegans Hypothetical pr...    27   3.0  
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr...    27   3.0  
AC006677-9|AAF39947.1|  344|Caenorhabditis elegans Serpentine re...    27   3.0  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U40030-6|AAA81135.3|  431|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U40030-5|AAR12976.2|  506|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    26   7.0  
AC024751-12|ABF71717.1|  301|Caenorhabditis elegans Collagen pro...    26   7.0  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    26   9.3  
AL132876-15|CAD21668.2|  722|Caenorhabditis elegans Hypothetical...    26   9.3  
AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical...    26   9.3  
AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    26   9.3  
AB096636-1|BAC76736.1|  722|Caenorhabditis elegans tyrosyl-tRNA ...    26   9.3  

>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 30.3 bits (65), Expect = 0.43
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 199 PYASSHPPLRSRLHQPDHQIPDS 267
           P +S HPPL S  H  +H  PD+
Sbjct: 66  PTSSHHPPLNSSSHHSNHNYPDT 88


>Z70213-6|CAA94176.1|  167|Caenorhabditis elegans Hypothetical
           protein ZK930.7 protein.
          Length = 167

 Score = 29.1 bits (62), Expect = 1.00
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 210 KPPSPAISATSTRSSNPRFHTPTTPDLTSISXNPLT 317
           KPP+P+     T   N   + P++P  T  S  PLT
Sbjct: 101 KPPAPSARTPPTIYENLAINAPSSPSATDASSVPLT 136


>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
           protein C08H9.2 protein.
          Length = 1220

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 180 MREDEGVASTLPPSTVTSAVVQQRSTVTGILRLGAE 73
           + ++ GV   +PP  VT+ V+       G+LR+ AE
Sbjct: 233 LTQNNGVKINIPPPHVTNEVISVTGEKDGVLRVAAE 268


>AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical
           protein Y41G9A.5 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 207 IKPPSPAISATSTRSSNPRFHTPTTPD-LTSISXNPLTP 320
           +   SPAI +T+T +++P+  T  TP+ +T++    + P
Sbjct: 266 VSSDSPAIESTTTTTASPKTSTTLTPEPITTVPAKDVKP 304


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 216 PSPAISATSTRSSNPRFHTPTTPDLTSISXNPLTPY 323
           P+P  + T+T  +NP   TPTT   TS   N ++P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPH 524


>U70852-3|AAK29822.1|  836|Caenorhabditis elegans Hypothetical
           protein F45E4.3b protein.
          Length = 836

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 207 IKPPSPAISATSTRSSNPRFHTPTT 281
           ++PPSPA+SA S R    R+H PT+
Sbjct: 269 MQPPSPAVSAFSPR----RYHHPTS 289


>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical
           protein F45E4.3a protein.
          Length = 1231

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 207 IKPPSPAISATSTRSSNPRFHTPTT 281
           ++PPSPA+SA S R    R+H PT+
Sbjct: 269 MQPPSPAVSAFSPR----RYHHPTS 289


>AC006677-9|AAF39947.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein56 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 83  SLKIPVTVDLCWTT-ADV--TVEGGNVLATPSSSRITIGGLALM 205
           ++KIP+ + L W+T  D+  TV  G  +  PS+S + +G L  +
Sbjct: 56  NMKIPLLISLAWSTNLDLMFTVYSGPYIFFPSASGVPLGLLGYL 99


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 216 PSPAISATSTRSSNPRFHTPTTPDLTSISXNPLTP 320
           P+P  + T+T  +NP   TPTT  + +I  +P  P
Sbjct: 490 PTPVPTTTNTPPANPTTATPTT--VGTIGTSPTAP 522


>U40030-6|AAA81135.3|  431|Caenorhabditis elegans Hypothetical
           protein T13C2.3a protein.
          Length = 431

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 71  PSAPSLKIPVTVDLCWTTADVTVEGGNVLATPSS 172
           P+ PSLK+P+++D   TT  +T    +   T S+
Sbjct: 184 PTLPSLKLPMSLDDLTTTKPMTTTTSSPTTTASA 217


>U40030-5|AAR12976.2|  506|Caenorhabditis elegans Hypothetical
           protein T13C2.3b protein.
          Length = 506

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 71  PSAPSLKIPVTVDLCWTTADVTVEGGNVLATPSS 172
           P+ PSLK+P+++D   TT  +T    +   T S+
Sbjct: 259 PTLPSLKLPMSLDDLTTTKPMTTTTSSPTTTASA 292


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 204  CIKPPSPAISATSTRSSNPRFHTPTTPDLTSISXNPLT 317
            C++PP+   + TST        T TTP LT+ S  P T
Sbjct: 1149 CVRPPTTPTTTTSTT-------TTTTPKLTTTSTLPST 1179


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
           protein F36H2.3 protein.
          Length = 1388

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 280 VVGVWNRGFDDRVDVAEIAGE 218
           VVGVW RGFD+      I+ E
Sbjct: 34  VVGVWKRGFDNSTAQYRISDE 54


>AC024751-12|ABF71717.1|  301|Caenorhabditis elegans Collagen
           protein 47 protein.
          Length = 301

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -2

Query: 319 GVRGXMEMDVKSGVVGVWNRGFDDRVDVAEIAGEGGLMHKGETANSNARG*RGG 158
           G+ G   +D   G  GV   G  D V +  + G+ G   +GE  N  ++G RGG
Sbjct: 170 GLAGQDGLDGAPGEPGV---GGMDAVKIVSVDGKIG--RRGEAGNKGSKGSRGG 218


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = +3

Query: 213 PPSPAISATSTRSSNPRFHTPTTPDLTSI-SXNPLTPY*KEFAPGLK 350
           PP P  S        PR  TP  P L  +   NP T    EF  G++
Sbjct: 115 PPPPPPSGLGVAPQPPRPKTPVNPALAKLGGKNPGTVDRGEFLKGIQ 161


>AL132876-15|CAD21668.2|  722|Caenorhabditis elegans Hypothetical
           protein Y105E8A.19 protein.
          Length = 722

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 295 DVKSGVVGVWNRGFDD-RVDVAE 230
           D+K+ VVGV NR FD  R D AE
Sbjct: 681 DLKNAVVGVINRLFDGVRADFAE 703


>AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12b protein.
          Length = 504

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 180 MREDEGVASTLPPSTVTSAV----VQQRSTVTGILRLGAEG 70
           +R D+G A T  PST  +AV    V Q ST   + +L A G
Sbjct: 33  VRSDDGEAETSEPSTSVTAVPMEIVSQASTSAPVNQLLASG 73


>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 180 MREDEGVASTLPPSTVTSAV----VQQRSTVTGILRLGAEG 70
           +R D+G A T  PST  +AV    V Q ST   + +L A G
Sbjct: 33  VRSDDGEAETSEPSTSVTAVPMEIVSQASTSAPVNQLLASG 73


>AB096636-1|BAC76736.1|  722|Caenorhabditis elegans tyrosyl-tRNA
           synthetase (cytoplasmic)protein.
          Length = 722

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 295 DVKSGVVGVWNRGFDD-RVDVAE 230
           D+K+ VVGV NR FD  R D AE
Sbjct: 681 DLKNAVVGVINRLFDGVRADFAE 703


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,631,163
Number of Sequences: 27780
Number of extensions: 147995
Number of successful extensions: 669
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)