Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6f09
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 163 1e-40
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 151 4e-37
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05) 29 2.2
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083) 29 2.2
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23) 28 5.2
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.9
SB_44297| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.9
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.9
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.9
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_1761| Best HMM Match : ERF (HMM E-Value=6.8) 28 6.9
SB_42440| Best HMM Match : RnaseH (HMM E-Value=0.9) 28 6.9
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 28 6.9
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 6.9
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 27 9.1
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 27 9.1
SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014) 27 9.1
SB_13736| Best HMM Match : PHD (HMM E-Value=0.001) 27 9.1
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001) 27 9.1
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24) 27 9.1
SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0) 27 9.1
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001) 27 9.1
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 163 bits (395), Expect = 1e-40
Identities = 94/200 (47%), Positives = 115/200 (57%), Gaps = 37/200 (18%)
Frame = +3
Query: 123 RRREGKTDYYARKR------------------------LVVQDKNKYNTP------KYRL 212
RR +GKTDYYARKR ++ Q++NK P KYR
Sbjct: 17 RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQERNKVGGPIFGSTQKYRR 76
Query: 213 IVRLS-NK------DVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXX 371
R NK ++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY TG
Sbjct: 77 NSRGKYNKRNIFILQTYARIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLL 136
Query: 372 XXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMK 551
EYNVE VD PGAFRC+LDVGLART+TGARVFGA+K
Sbjct: 137 LARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALK 196
Query: 552 GAVDGGLNVPHSIKRFPGYD 611
GAVDGGL +PHS+KRFPGYD
Sbjct: 197 GAVDGGLEIPHSMKRFPGYD 216
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 151 bits (366), Expect = 4e-37
Identities = 69/112 (61%), Positives = 80/112 (71%)
Frame = +3
Query: 249 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 428
+AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG
Sbjct: 1 IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60
Query: 429 XXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 584
EYNVE +D PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 61 EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112
>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
Length = 791
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 574 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 461
+RP PF+ P +RAP A PT+ P P S+
Sbjct: 356 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 393
>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
Length = 624
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 574 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 461
+RP PF+ P +RAP A PT+ P P S+
Sbjct: 222 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 259
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 210 LIVRLSNKDVTCQVAYSRIEGD-HIVC 287
L++ LS +D+TC V YS G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134
>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
Length = 232
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 146 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 39
ISFPFTT E Y +V F+ N LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 258 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 356
++ GDH+ A+YSH ++ R+ V + L AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166
>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2353
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 130 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKER 2
RRL+ Y +Y F TL PI+ + +T+ + T TK K R
Sbjct: 1200 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSR 1241
>SB_44297| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 824
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 130 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKER 2
RRL+ Y +Y F TL PI+ + +T+ + T TK K R
Sbjct: 663 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSR 704
>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1020
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 130 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKER 2
RRL+ Y +Y F TL PI+ + +T+ + T TK K R
Sbjct: 263 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSR 304
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 130 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKER 2
RRL+ Y +Y F TL PI+ + +T+ + T TK K R
Sbjct: 356 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSR 397
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 78 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 173
VK+K+ KR K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259
>SB_1761| Best HMM Match : ERF (HMM E-Value=6.8)
Length = 299
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 130 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKER 2
RRL+ Y +Y F TL PI+ + +T+ + T TK K R
Sbjct: 97 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKNR 138
>SB_42440| Best HMM Match : RnaseH (HMM E-Value=0.9)
Length = 348
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 130 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKER 2
RRL+ Y +Y F TL PI+ + +T+ + T TK K R
Sbjct: 110 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSR 151
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 63 GFVKVVKNKQYFKRYQVKFKRRREGKTDY 149
GF++ +K + RY VK R R DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 130 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKER 2
RRL+ Y +Y F TL PI+ + +T+ + T TK K R
Sbjct: 755 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSR 796
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 604 PGNLLME*GTLRPPSTAPFIAPKTRAPV 521
P +M T+RPP T F+ T+APV
Sbjct: 1658 PETTVMPDTTMRPPKTDVFVTEATKAPV 1685
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 216 VRLSNKDVTCQVAYSRIEGDHIVCAAY 296
VRL ++D TC +YS I + +CA Y
Sbjct: 405 VRLVSRD-TCNASYSGIINERYICAGY 430
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 284 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 400
V+C + +C+ W CCSI N S + +S +W
Sbjct: 91 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 129
>SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)
Length = 598
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 284 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 400
V+C + +C+ W CCSI N S + +S +W
Sbjct: 104 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 142
>SB_13736| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 226
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 284 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 400
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 623
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 284 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 400
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 284 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 400
V+C + +C+ W CCSI N S + +S +W
Sbjct: 359 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 397
>SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24)
Length = 830
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 284 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 400
V+C + +C+ W CCSI N S + +S +W
Sbjct: 645 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 683
>SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 284 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 400
V+C + +C+ W CCSI N S + +S +W
Sbjct: 184 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 222
>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 718
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 216 VRLSNKDVTCQVAYSRIEGDHIVCAAY 296
VRL ++D TC +YS I + +CA Y
Sbjct: 690 VRLVSRD-TCNASYSGIINERYICAGY 715
>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 560
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 284 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 400
V+C + +C+ W CCSI N S + +S +W
Sbjct: 23 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,381,244
Number of Sequences: 59808
Number of extensions: 414262
Number of successful extensions: 1313
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -