Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6f06
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    25   0.54 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    23   2.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.9  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   3.8  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   6.7  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +1

Query: 313 WRTLPESGWPPRLVWRRRKLEGQCEQAIPWIQIENSGFTYMDHQLLRTLRRTI*HKP*TT 492
           W+  P++   P      + LEG  E    ++QIEN   T ++H++ + +   I  K  +T
Sbjct: 731 WKECPKNR--PTFTELSKSLEGLLENVAQYLQIENVEQT-LNHEIKKVIPGRITQKSCST 787

Query: 493 E 495
           +
Sbjct: 788 K 788


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 260 HNGILYVGDEDHYAMPQYGVLSRSPVGL 343
           H  I Y+ D DH  +  +GV+  S   +
Sbjct: 367 HVFISYIHDPDHRHLESFGVMGDSATAM 394


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 369 LSSPPYQTRRPTGLRESTPY 310
           LS PP+    P  ++++TPY
Sbjct: 278 LSPPPHVYNPPDHIQQATPY 297


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 340 PPRLVWRRRKLEGQCEQAIPWI 405
           PP+L    RK    C+ A+P++
Sbjct: 232 PPQLEVNERKENLTCQPAVPYV 253


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 260 HNGILYVGDEDHYAMPQYGVLSRSPVGL 343
           H  I Y+ D DH  +  +GV++   V L
Sbjct: 367 HILIGYIHDPDHRFLEPFGVMADPAVDL 394


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,732
Number of Sequences: 336
Number of extensions: 4211
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)